Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4356

Experiment: Chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4355 and Shewana3_4356 are separated by 200 nucleotidesShewana3_4356 and Shewana3_4357 are separated by 9 nucleotides Shewana3_4355: Shewana3_4355 - hypothetical protein (RefSeq), at 240,677 to 241,708 _4355 Shewana3_4356: Shewana3_4356 - XRE family transcriptional regulator (RefSeq), at 241,909 to 242,253 _4356 Shewana3_4357: Shewana3_4357 - hypothetical protein (RefSeq), at 242,263 to 243,072 _4357 Position (kb) 241 242 243Strain fitness (log2 ratio) -2 -1 0 1at 240.935 kb on - strand, within Shewana3_4355at 240.950 kb on - strand, within Shewana3_4355at 241.161 kb on + strand, within Shewana3_4355at 241.252 kb on + strand, within Shewana3_4355at 241.379 kb on - strand, within Shewana3_4355at 241.485 kb on + strand, within Shewana3_4355at 241.493 kb on - strand, within Shewana3_4355at 241.494 kb on + strand, within Shewana3_4355at 241.617 kb on - strandat 241.621 kb on - strandat 241.629 kb on - strandat 241.643 kb on + strandat 241.644 kb on + strandat 241.652 kb on - strandat 241.774 kb on + strandat 241.774 kb on + strandat 241.782 kb on - strandat 241.786 kb on + strandat 241.986 kb on + strand, within Shewana3_4356at 241.986 kb on + strand, within Shewana3_4356at 242.044 kb on + strand, within Shewana3_4356at 242.107 kb on - strand, within Shewana3_4356at 242.423 kb on - strand, within Shewana3_4357at 242.509 kb on + strand, within Shewana3_4357at 242.518 kb on + strand, within Shewana3_4357at 242.617 kb on + strand, within Shewana3_4357at 242.638 kb on - strand, within Shewana3_4357at 242.658 kb on + strand, within Shewana3_4357at 242.786 kb on - strand, within Shewana3_4357at 242.945 kb on + strand, within Shewana3_4357

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
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240,935 - Shewana3_4355 0.25 +1.2
240,950 - Shewana3_4355 0.26 +0.4
241,161 + Shewana3_4355 0.47 -0.8
241,252 + Shewana3_4355 0.56 +0.1
241,379 - Shewana3_4355 0.68 -0.2
241,485 + Shewana3_4355 0.78 -1.9
241,493 - Shewana3_4355 0.79 +1.3
241,494 + Shewana3_4355 0.79 -0.8
241,617 - +0.2
241,621 - +0.3
241,629 - -0.9
241,643 + -0.9
241,644 + +0.6
241,652 - +0.9
241,774 + -0.1
241,774 + +0.0
241,782 - +0.3
241,786 + +0.4
241,986 + Shewana3_4356 0.22 +1.0
241,986 + Shewana3_4356 0.22 +0.5
242,044 + Shewana3_4356 0.39 +0.9
242,107 - Shewana3_4356 0.57 -0.6
242,423 - Shewana3_4357 0.20 +0.1
242,509 + Shewana3_4357 0.30 -0.2
242,518 + Shewana3_4357 0.31 -1.1
242,617 + Shewana3_4357 0.44 -0.8
242,638 - Shewana3_4357 0.46 +0.7
242,658 + Shewana3_4357 0.49 -1.7
242,786 - Shewana3_4357 0.65 -0.1
242,945 + Shewana3_4357 0.84 -0.3

Or see this region's nucleotide sequence