Experiment: Chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4227 and Shewana3_4228 are separated by 651 nucleotides Shewana3_4228 and Shewana3_4229 are separated by 72 nucleotides Shewana3_4229 and Shewana3_4230 are separated by 128 nucleotides
Shewana3_4227: Shewana3_4227 - initiator RepB protein (RefSeq), at 100,875 to 102,038
_4227
Shewana3_4228: Shewana3_4228 - hypothetical protein (RefSeq), at 102,690 to 103,265
_4228
Shewana3_4229: Shewana3_4229 - single-strand binding protein (RefSeq), at 103,338 to 103,865
_4229
Shewana3_4230: Shewana3_4230 - hypothetical protein (RefSeq), at 103,994 to 105,601
_4230
Position (kb) 102
103
104 Strain fitness (log2 ratio) -2
-1
0
1 at 102.711 kb on - strand at 102.773 kb on + strand, within Shewana3_4228 at 102.805 kb on + strand, within Shewana3_4228 at 102.813 kb on - strand, within Shewana3_4228 at 103.053 kb on + strand, within Shewana3_4228 at 103.053 kb on + strand, within Shewana3_4228 at 103.056 kb on - strand, within Shewana3_4228 at 103.148 kb on - strand, within Shewana3_4228 at 103.321 kb on + strand at 103.329 kb on - strand at 103.466 kb on - strand, within Shewana3_4229 at 103.632 kb on - strand, within Shewana3_4229 at 103.682 kb on + strand, within Shewana3_4229 at 103.859 kb on + strand at 103.866 kb on + strand at 103.867 kb on - strand at 103.912 kb on + strand at 103.925 kb on + strand at 104.223 kb on + strand, within Shewana3_4230
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.16 mM remove 102,711 - -2.1 102,773 + Shewana3_4228 0.14 -0.5 102,805 + Shewana3_4228 0.20 +0.2 102,813 - Shewana3_4228 0.21 -0.6 103,053 + Shewana3_4228 0.63 +0.2 103,053 + Shewana3_4228 0.63 -1.7 103,056 - Shewana3_4228 0.64 -0.7 103,148 - Shewana3_4228 0.80 -1.1 103,321 + +0.3 103,329 - -0.8 103,466 - Shewana3_4229 0.24 +0.7 103,632 - Shewana3_4229 0.56 -1.1 103,682 + Shewana3_4229 0.65 +0.7 103,859 + +0.7 103,866 + +0.4 103,867 - -0.9 103,912 + +0.1 103,925 + +0.4 104,223 + Shewana3_4230 0.14 +0.1
Or see this region's nucleotide sequence