Experiment: Chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4181 and Shewana3_4182 are separated by 354 nucleotides Shewana3_4182 and Shewana3_4183 are separated by 71 nucleotides Shewana3_4183 and Shewana3_4184 are separated by 82 nucleotides
Shewana3_4181: Shewana3_4181 - hypothetical protein (RefSeq), at 47,179 to 47,901
_4181
Shewana3_4182: Shewana3_4182 - hypothetical protein (RefSeq), at 48,256 to 48,957
_4182
Shewana3_4183: Shewana3_4183 - lytic transglycosylase, catalytic (RefSeq), at 49,029 to 49,559
_4183
Shewana3_4184: Shewana3_4184 - IS605 family transposase OrfB (RefSeq), at 49,642 to 50,745
_4184
Position (kb)
48
49 Strain fitness (log2 ratio)
-2
-1
0
1 at 47.298 kb on + strand, within Shewana3_4181 at 47.414 kb on - strand, within Shewana3_4181 at 47.517 kb on + strand, within Shewana3_4181 at 47.547 kb on + strand, within Shewana3_4181 at 47.671 kb on + strand, within Shewana3_4181 at 47.689 kb on - strand, within Shewana3_4181 at 47.699 kb on - strand, within Shewana3_4181 at 48.385 kb on + strand, within Shewana3_4182 at 48.474 kb on - strand, within Shewana3_4182 at 48.609 kb on - strand, within Shewana3_4182 at 48.644 kb on + strand, within Shewana3_4182 at 48.652 kb on - strand, within Shewana3_4182 at 48.992 kb on - strand at 49.174 kb on - strand, within Shewana3_4183 at 49.266 kb on - strand, within Shewana3_4183 at 49.268 kb on + strand, within Shewana3_4183 at 49.273 kb on + strand, within Shewana3_4183 at 49.276 kb on - strand, within Shewana3_4183 at 49.281 kb on - strand, within Shewana3_4183 at 49.300 kb on - strand, within Shewana3_4183 at 49.459 kb on + strand, within Shewana3_4183 at 49.469 kb on + strand, within Shewana3_4183 at 49.541 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.16 mM remove 47,298 + Shewana3_4181 0.16 +0.4 47,414 - Shewana3_4181 0.33 -0.4 47,517 + Shewana3_4181 0.47 -0.7 47,547 + Shewana3_4181 0.51 -1.2 47,671 + Shewana3_4181 0.68 -0.2 47,689 - Shewana3_4181 0.71 +0.6 47,699 - Shewana3_4181 0.72 -0.2 48,385 + Shewana3_4182 0.18 +0.0 48,474 - Shewana3_4182 0.31 -1.1 48,609 - Shewana3_4182 0.50 -1.3 48,644 + Shewana3_4182 0.55 -1.5 48,652 - Shewana3_4182 0.56 -1.9 48,992 - -0.2 49,174 - Shewana3_4183 0.27 +0.8 49,266 - Shewana3_4183 0.45 -0.5 49,268 + Shewana3_4183 0.45 -0.6 49,273 + Shewana3_4183 0.46 +0.5 49,276 - Shewana3_4183 0.47 +0.3 49,281 - Shewana3_4183 0.47 -0.9 49,300 - Shewana3_4183 0.51 +0.1 49,459 + Shewana3_4183 0.81 -1.1 49,469 + Shewana3_4183 0.83 -1.2 49,541 + -1.0
Or see this region's nucleotide sequence