Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4174

Experiment: Chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4172 and Shewana3_4173 overlap by 4 nucleotidesShewana3_4173 and Shewana3_4174 are separated by 205 nucleotidesShewana3_4174 and Shewana3_4175 are separated by 240 nucleotides Shewana3_4172: Shewana3_4172 - DNA-directed DNA polymerase (RefSeq), at 38,365 to 39,615 _4172 Shewana3_4173: Shewana3_4173 - putative prophage repressor (RefSeq), at 39,612 to 40,346 _4173 Shewana3_4174: Shewana3_4174 - hypothetical protein (RefSeq), at 40,552 to 40,911 _4174 Shewana3_4175: Shewana3_4175 - hypothetical protein (RefSeq), at 41,152 to 42,258 _4175 Position (kb) 40 41Strain fitness (log2 ratio) -3 -2 -1 0 1at 39.564 kb on + strandat 39.608 kb on - strandat 39.649 kb on - strandat 39.663 kb on - strandat 39.681 kb on + strandat 39.694 kb on + strand, within Shewana3_4173at 39.747 kb on + strand, within Shewana3_4173at 39.755 kb on - strand, within Shewana3_4173at 39.784 kb on + strand, within Shewana3_4173at 39.852 kb on + strand, within Shewana3_4173at 40.203 kb on - strand, within Shewana3_4173at 40.244 kb on + strand, within Shewana3_4173at 40.304 kb on - strandat 40.459 kb on + strandat 40.467 kb on - strandat 40.477 kb on - strandat 40.526 kb on + strandat 40.544 kb on - strandat 40.544 kb on - strandat 40.544 kb on - strandat 40.544 kb on - strandat 40.573 kb on - strandat 40.791 kb on - strand, within Shewana3_4174at 40.840 kb on - strand, within Shewana3_4174at 40.874 kb on - strand, within Shewana3_4174at 40.881 kb on + strandat 41.088 kb on - strandat 41.271 kb on - strand, within Shewana3_4175at 41.863 kb on + strand, within Shewana3_4175

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
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39,564 + +0.0
39,608 - +0.5
39,649 - +0.0
39,663 - -0.4
39,681 + -3.3
39,694 + Shewana3_4173 0.11 -1.1
39,747 + Shewana3_4173 0.18 -0.6
39,755 - Shewana3_4173 0.19 +0.2
39,784 + Shewana3_4173 0.23 -1.1
39,852 + Shewana3_4173 0.33 -0.3
40,203 - Shewana3_4173 0.80 +0.2
40,244 + Shewana3_4173 0.86 +0.1
40,304 - +0.5
40,459 + +1.3
40,467 - -0.1
40,477 - -0.4
40,526 + -1.7
40,544 - -0.1
40,544 - +0.7
40,544 - +0.5
40,544 - +1.6
40,573 - +0.7
40,791 - Shewana3_4174 0.66 +1.3
40,840 - Shewana3_4174 0.80 +0.6
40,874 - Shewana3_4174 0.89 -1.4
40,881 + +0.1
41,088 - +0.4
41,271 - Shewana3_4175 0.11 +1.7
41,863 + Shewana3_4175 0.64 +0.3

Or see this region's nucleotide sequence