Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3606 and Shew_3607 are separated by 248 nucleotides Shew_3607 and Shew_3608 overlap by 1 nucleotides Shew_3608 and Shew_3609 are separated by 78 nucleotides
Shew_3606: Shew_3606 - signal recognition particle-docking protein FtsY (RefSeq), at 4,304,363 to 4,306,048
_3606
Shew_3607: Shew_3607 - putative methyltransferase (RefSeq), at 4,306,297 to 4,306,884
_3607
Shew_3608: Shew_3608 - hypothetical protein (RefSeq), at 4,306,884 to 4,307,174
_3608
Shew_3609: Shew_3609 - type II secretion system protein N (RefSeq), at 4,307,253 to 4,308,014
_3609
Position (kb) 4306
4307 Strain fitness (log2 ratio) -1
0
1 at 4306.057 kb on - strand at 4306.057 kb on - strand at 4306.234 kb on + strand at 4306.234 kb on + strand at 4306.234 kb on + strand at 4306.240 kb on + strand at 4306.242 kb on - strand at 4306.242 kb on - strand at 4306.248 kb on - strand at 4306.326 kb on + strand at 4306.501 kb on - strand, within Shew_3607 at 4306.616 kb on - strand, within Shew_3607 at 4306.617 kb on - strand, within Shew_3607 at 4306.632 kb on + strand, within Shew_3607 at 4306.699 kb on + strand, within Shew_3607 at 4306.704 kb on + strand, within Shew_3607 at 4306.755 kb on + strand, within Shew_3607 at 4306.868 kb on - strand at 4307.094 kb on + strand, within Shew_3608 at 4307.322 kb on + strand at 4307.398 kb on + strand, within Shew_3609 at 4307.431 kb on - strand, within Shew_3609 at 4307.849 kb on + strand, within Shew_3609
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,306,057 - -0.1 4,306,057 - -0.3 4,306,234 + +0.4 4,306,234 + +0.3 4,306,234 + -0.2 4,306,240 + +0.5 4,306,242 - +0.7 4,306,242 - -0.5 4,306,248 - -1.6 4,306,326 + -0.2 4,306,501 - Shew_3607 0.35 -0.2 4,306,616 - Shew_3607 0.54 -0.8 4,306,617 - Shew_3607 0.54 +0.1 4,306,632 + Shew_3607 0.57 -0.2 4,306,699 + Shew_3607 0.68 -0.4 4,306,704 + Shew_3607 0.69 -0.6 4,306,755 + Shew_3607 0.78 -1.0 4,306,868 - +0.2 4,307,094 + Shew_3608 0.72 +0.2 4,307,322 + -0.4 4,307,398 + Shew_3609 0.19 -0.1 4,307,431 - Shew_3609 0.23 -0.5 4,307,849 + Shew_3609 0.78 -1.1
Or see this region's nucleotide sequence