Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3535 and Shew_3536 are separated by 23 nucleotides Shew_3536 and Shew_3537 are separated by 269 nucleotides Shew_3537 and Shew_3538 are separated by 105 nucleotides Shew_3538 and Shew_3539 are separated by 118 nucleotides
Shew_3535: Shew_3535 - RND family efflux transporter MFP subunit (RefSeq), at 4,224,969 to 4,226,558
_3535
Shew_3536: Shew_3536 - hypothetical protein (RefSeq), at 4,226,582 to 4,227,115
_3536
Shew_3537: Shew_3537 - hypothetical protein (RefSeq), at 4,227,385 to 4,227,792
_3537
Shew_3538: Shew_3538 - hypothetical protein (RefSeq), at 4,227,898 to 4,228,335
_3538
Shew_3539: Shew_3539 - hypothetical protein (RefSeq), at 4,228,454 to 4,228,978
_3539
Position (kb) 4227
4228 Strain fitness (log2 ratio) -1
0
1 at 4226.523 kb on + strand at 4226.798 kb on + strand, within Shew_3536 at 4227.016 kb on - strand, within Shew_3536 at 4227.016 kb on - strand, within Shew_3536 at 4227.101 kb on + strand at 4227.125 kb on + strand at 4227.172 kb on + strand at 4227.456 kb on - strand, within Shew_3537 at 4227.474 kb on + strand, within Shew_3537 at 4227.728 kb on + strand, within Shew_3537 at 4227.758 kb on - strand at 4227.794 kb on + strand at 4227.794 kb on + strand at 4227.794 kb on + strand at 4227.814 kb on + strand at 4227.879 kb on - strand at 4227.935 kb on - strand at 4227.938 kb on - strand at 4227.986 kb on + strand, within Shew_3538 at 4228.082 kb on + strand, within Shew_3538 at 4228.092 kb on + strand, within Shew_3538 at 4228.237 kb on - strand, within Shew_3538 at 4228.262 kb on - strand, within Shew_3538 at 4228.477 kb on - strand at 4228.638 kb on - strand, within Shew_3539
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,226,523 + +0.3 4,226,798 + Shew_3536 0.40 +0.2 4,227,016 - Shew_3536 0.81 +0.1 4,227,016 - Shew_3536 0.81 +0.4 4,227,101 + -0.1 4,227,125 + +0.5 4,227,172 + +0.2 4,227,456 - Shew_3537 0.17 -0.6 4,227,474 + Shew_3537 0.22 -0.4 4,227,728 + Shew_3537 0.84 -0.6 4,227,758 - +0.6 4,227,794 + +0.2 4,227,794 + +0.1 4,227,794 + +0.2 4,227,814 + +0.4 4,227,879 - -0.1 4,227,935 - +0.0 4,227,938 - +0.1 4,227,986 + Shew_3538 0.20 +0.7 4,228,082 + Shew_3538 0.42 -0.0 4,228,092 + Shew_3538 0.44 +0.0 4,228,237 - Shew_3538 0.77 +0.6 4,228,262 - Shew_3538 0.83 -0.1 4,228,477 - -0.5 4,228,638 - Shew_3539 0.35 -0.0
Or see this region's nucleotide sequence