Strain Fitness in Shewanella loihica PV-4 around Shew_2768

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmotB and Shew_2768 are separated by 4 nucleotidesShew_2768 and Shew_2769 are separated by 395 nucleotidesShew_2769 and Shew_2770 are separated by 0 nucleotides Shew_2767: motB - flagellar motor protein MotB (RefSeq), at 3,272,510 to 3,273,454 motB Shew_2768: Shew_2768 - flagellar motor protein PomA (RefSeq), at 3,273,459 to 3,274,226 _2768 Shew_2769: Shew_2769 - exodeoxyribonuclease VII, small subunit (RefSeq), at 3,274,622 to 3,274,861 _2769 Shew_2770: Shew_2770 - polyprenyl synthetase (RefSeq), at 3,274,862 to 3,275,743 _2770 Position (kb) 3273 3274 3275Strain fitness (log2 ratio) -2 -1 0 1at 3272.530 kb on + strandat 3272.799 kb on + strand, within motBat 3272.799 kb on + strand, within motBat 3272.799 kb on + strand, within motBat 3272.807 kb on - strand, within motBat 3272.846 kb on - strand, within motBat 3273.791 kb on + strand, within Shew_2768at 3273.801 kb on - strand, within Shew_2768at 3273.982 kb on + strand, within Shew_2768at 3274.078 kb on + strand, within Shew_2768at 3274.121 kb on + strand, within Shew_2768at 3274.205 kb on - strandat 3274.313 kb on - strandat 3274.313 kb on - strandat 3274.317 kb on + strandat 3274.320 kb on + strandat 3274.420 kb on - strandat 3274.475 kb on + strandat 3274.694 kb on + strand, within Shew_2769

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,272,530 + -0.0
3,272,799 + motB Shew_2767 0.31 -1.0
3,272,799 + motB Shew_2767 0.31 -1.0
3,272,799 + motB Shew_2767 0.31 -0.5
3,272,807 - motB Shew_2767 0.31 -0.0
3,272,846 - motB Shew_2767 0.36 -0.0
3,273,791 + Shew_2768 0.43 -0.7
3,273,801 - Shew_2768 0.45 -0.3
3,273,982 + Shew_2768 0.68 -0.6
3,274,078 + Shew_2768 0.81 -1.0
3,274,121 + Shew_2768 0.86 +0.2
3,274,205 - -0.2
3,274,313 - +0.1
3,274,313 - -0.1
3,274,317 + -1.9
3,274,320 + +0.1
3,274,420 - +0.4
3,274,475 + -0.2
3,274,694 + Shew_2769 0.30 -0.2

Or see this region's nucleotide sequence