Strain Fitness in Shewanella loihica PV-4 around Shew_2768
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
3,272,530 | + | -0.0 | |||
3,272,799 | + | motB | Shew_2767 | 0.31 | -1.0 |
3,272,799 | + | motB | Shew_2767 | 0.31 | -1.0 |
3,272,799 | + | motB | Shew_2767 | 0.31 | -0.5 |
3,272,807 | - | motB | Shew_2767 | 0.31 | -0.0 |
3,272,846 | - | motB | Shew_2767 | 0.36 | -0.0 |
3,273,791 | + | Shew_2768 | 0.43 | -0.7 | |
3,273,801 | - | Shew_2768 | 0.45 | -0.3 | |
3,273,982 | + | Shew_2768 | 0.68 | -0.6 | |
3,274,078 | + | Shew_2768 | 0.81 | -1.0 | |
3,274,121 | + | Shew_2768 | 0.86 | +0.2 | |
3,274,205 | - | -0.2 | |||
3,274,313 | - | +0.1 | |||
3,274,313 | - | -0.1 | |||
3,274,317 | + | -1.9 | |||
3,274,320 | + | +0.1 | |||
3,274,420 | - | +0.4 | |||
3,274,475 | + | -0.2 | |||
3,274,694 | + | Shew_2769 | 0.30 | -0.2 |
Or see this region's nucleotide sequence