Strain Fitness in Shewanella loihica PV-4 around Shew_2767

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2766 and motB are separated by 254 nucleotidesmotB and Shew_2768 are separated by 4 nucleotides Shew_2766: Shew_2766 - thiamine biosynthesis protein ThiI (RefSeq), at 3,270,798 to 3,272,255 _2766 Shew_2767: motB - flagellar motor protein MotB (RefSeq), at 3,272,510 to 3,273,454 motB Shew_2768: Shew_2768 - flagellar motor protein PomA (RefSeq), at 3,273,459 to 3,274,226 _2768 Position (kb) 3272 3273 3274Strain fitness (log2 ratio) -2 -1 0 1at 3271.797 kb on - strand, within Shew_2766at 3272.128 kb on + strandat 3272.530 kb on + strandat 3272.799 kb on + strand, within motBat 3272.799 kb on + strand, within motBat 3272.799 kb on + strand, within motBat 3272.807 kb on - strand, within motBat 3272.846 kb on - strand, within motBat 3273.791 kb on + strand, within Shew_2768at 3273.801 kb on - strand, within Shew_2768at 3273.982 kb on + strand, within Shew_2768at 3274.078 kb on + strand, within Shew_2768at 3274.121 kb on + strand, within Shew_2768at 3274.205 kb on - strandat 3274.313 kb on - strandat 3274.313 kb on - strandat 3274.317 kb on + strandat 3274.320 kb on + strandat 3274.420 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,271,797 - Shew_2766 0.69 +0.0
3,272,128 + +0.1
3,272,530 + -0.0
3,272,799 + motB Shew_2767 0.31 -1.0
3,272,799 + motB Shew_2767 0.31 -1.0
3,272,799 + motB Shew_2767 0.31 -0.5
3,272,807 - motB Shew_2767 0.31 -0.0
3,272,846 - motB Shew_2767 0.36 -0.0
3,273,791 + Shew_2768 0.43 -0.7
3,273,801 - Shew_2768 0.45 -0.3
3,273,982 + Shew_2768 0.68 -0.6
3,274,078 + Shew_2768 0.81 -1.0
3,274,121 + Shew_2768 0.86 +0.2
3,274,205 - -0.2
3,274,313 - +0.1
3,274,313 - -0.1
3,274,317 + -1.9
3,274,320 + +0.1
3,274,420 - +0.4

Or see this region's nucleotide sequence