Strain Fitness in Shewanella loihica PV-4 around Shew_2723
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
3,222,087 | - | Shew_2721 | 0.75 | -0.2 | |
3,222,340 | + | Shew_2722 | 0.15 | +0.2 | |
3,222,625 | + | Shew_2722 | 0.55 | -0.1 | |
3,222,633 | - | Shew_2722 | 0.56 | +1.2 | |
3,223,193 | + | Shew_2723 | 0.38 | -0.7 | |
3,223,247 | + | Shew_2723 | 0.48 | -0.5 | |
3,223,911 | + | Shew_2724 | 0.32 | -0.4 | |
3,223,911 | + | Shew_2724 | 0.32 | -1.5 | |
3,223,919 | - | Shew_2724 | 0.33 | -0.0 | |
3,224,291 | + | Shew_2724 | 0.73 | +0.3 | |
3,224,299 | - | Shew_2724 | 0.74 | +0.3 | |
3,224,402 | - | Shew_2724 | 0.85 | -0.1 | |
3,224,458 | + | +0.0 |
Or see this region's nucleotide sequence