Strain Fitness in Shewanella loihica PV-4 around Shew_2723

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2721 and Shew_2722 are separated by 81 nucleotidesShew_2722 and Shew_2723 are separated by 46 nucleotidesShew_2723 and Shew_2724 are separated by 94 nucleotides Shew_2721: Shew_2721 - hypothetical protein (RefSeq), at 3,221,882 to 3,222,154 _2721 Shew_2722: Shew_2722 - hypothetical protein (RefSeq), at 3,222,236 to 3,222,943 _2722 Shew_2723: Shew_2723 - NUDIX hydrolase (RefSeq), at 3,222,990 to 3,223,526 _2723 Shew_2724: Shew_2724 - indigoidine synthase A family protein (RefSeq), at 3,223,621 to 3,224,535 _2724 Position (kb) 3222 3223 3224Strain fitness (log2 ratio) -1 0 1at 3222.087 kb on - strand, within Shew_2721at 3222.340 kb on + strand, within Shew_2722at 3222.625 kb on + strand, within Shew_2722at 3222.633 kb on - strand, within Shew_2722at 3223.193 kb on + strand, within Shew_2723at 3223.247 kb on + strand, within Shew_2723at 3223.911 kb on + strand, within Shew_2724at 3223.911 kb on + strand, within Shew_2724at 3223.919 kb on - strand, within Shew_2724at 3224.291 kb on + strand, within Shew_2724at 3224.299 kb on - strand, within Shew_2724at 3224.402 kb on - strand, within Shew_2724at 3224.458 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,222,087 - Shew_2721 0.75 -0.2
3,222,340 + Shew_2722 0.15 +0.2
3,222,625 + Shew_2722 0.55 -0.1
3,222,633 - Shew_2722 0.56 +1.2
3,223,193 + Shew_2723 0.38 -0.7
3,223,247 + Shew_2723 0.48 -0.5
3,223,911 + Shew_2724 0.32 -0.4
3,223,911 + Shew_2724 0.32 -1.5
3,223,919 - Shew_2724 0.33 -0.0
3,224,291 + Shew_2724 0.73 +0.3
3,224,299 - Shew_2724 0.74 +0.3
3,224,402 - Shew_2724 0.85 -0.1
3,224,458 + +0.0

Or see this region's nucleotide sequence