Strain Fitness in Shewanella loihica PV-4 around Shew_2508

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntclpX and clpP are separated by 84 nucleotidesclpP and tig are separated by 89 nucleotides Shew_2507: clpX - ATP-dependent protease ATP-binding subunit (RefSeq), at 2,949,498 to 2,950,778 clpX Shew_2508: clpP - ATP-dependent Clp protease proteolytic subunit (RefSeq), at 2,950,863 to 2,951,474 clpP Shew_2509: tig - trigger factor (RefSeq), at 2,951,564 to 2,952,868 tig Position (kb) 2950 2951 2952Strain fitness (log2 ratio) -1 0 1at 2950.980 kb on - strand, within clpPat 2951.450 kb on - strandat 2951.795 kb on - strand, within tigat 2951.867 kb on - strand, within tigat 2952.413 kb on - strand, within tig

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,950,980 - clpP Shew_2508 0.19 -1.0
2,951,450 - -1.5
2,951,795 - tig Shew_2509 0.18 +0.2
2,951,867 - tig Shew_2509 0.23 +0.5
2,952,413 - tig Shew_2509 0.65 +1.1

Or see this region's nucleotide sequence