Strain Fitness in Shewanella loihica PV-4 around Shew_2473

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2471 and Shew_2472 are separated by 79 nucleotidesShew_2472 and Shew_2473 are separated by 59 nucleotidesShew_2473 and Shew_2474 are separated by 2 nucleotidesShew_2474 and Shew_2475 are separated by 1 nucleotides Shew_2471: Shew_2471 - hypothetical protein (RefSeq), at 2,905,888 to 2,907,723 _2471 Shew_2472: Shew_2472 - diguanylate cyclase (RefSeq), at 2,907,803 to 2,908,312 _2472 Shew_2473: Shew_2473 - tetratricopeptide domain-containing protein (RefSeq), at 2,908,372 to 2,909,619 _2473 Shew_2474: Shew_2474 - TonB family protein (RefSeq), at 2,909,622 to 2,910,239 _2474 Shew_2475: Shew_2475 - biopolymer transport protein ExbD/TolR (RefSeq), at 2,910,241 to 2,910,645 _2475 Position (kb) 2908 2909 2910Strain fitness (log2 ratio) -2 -1 0 1at 2907.419 kb on - strand, within Shew_2471at 2907.544 kb on - strandat 2909.204 kb on + strand, within Shew_2473at 2910.541 kb on + strand, within Shew_2475

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,907,419 - Shew_2471 0.83 +0.9
2,907,544 - -2.3
2,909,204 + Shew_2473 0.67 -1.3
2,910,541 + Shew_2475 0.74 -0.3

Or see this region's nucleotide sequence