Strain Fitness in Shewanella loihica PV-4 around Shew_2282

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2281 and Shew_2282 are separated by 196 nucleotidesShew_2282 and Shew_2283 are separated by 137 nucleotides Shew_2281: Shew_2281 - flavocytochrome c (RefSeq), at 2,664,207 to 2,665,766 _2281 Shew_2282: Shew_2282 - Fis family transcriptional regulator (RefSeq), at 2,665,963 to 2,667,486 _2282 Shew_2283: Shew_2283 - porin (RefSeq), at 2,667,624 to 2,668,781 _2283 Position (kb) 2665 2666 2667 2668Strain fitness (log2 ratio) -2 -1 0 1at 2665.245 kb on + strand, within Shew_2281at 2665.245 kb on + strand, within Shew_2281at 2665.253 kb on - strand, within Shew_2281at 2665.257 kb on + strand, within Shew_2281at 2666.145 kb on + strand, within Shew_2282at 2666.597 kb on - strand, within Shew_2282at 2668.138 kb on - strand, within Shew_2283at 2668.280 kb on - strand, within Shew_2283

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,665,245 + Shew_2281 0.67 -0.3
2,665,245 + Shew_2281 0.67 -2.6
2,665,253 - Shew_2281 0.67 -0.0
2,665,257 + Shew_2281 0.67 -0.5
2,666,145 + Shew_2282 0.12 -1.0
2,666,597 - Shew_2282 0.42 -0.3
2,668,138 - Shew_2283 0.44 -0.3
2,668,280 - Shew_2283 0.57 -0.2

Or see this region's nucleotide sequence