Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2140 and Shew_2141 are separated by 281 nucleotides Shew_2141 and Shew_2142 are separated by 255 nucleotides Shew_2142 and Shew_2143 are separated by 57 nucleotides
Shew_2140: Shew_2140 - hypothetical protein (RefSeq), at 2,486,164 to 2,487,036
_2140
Shew_2141: Shew_2141 - lytic murein transglycosylase (RefSeq), at 2,487,318 to 2,488,505
_2141
Shew_2142: Shew_2142 - hypothetical protein (RefSeq), at 2,488,761 to 2,489,135
_2142
Shew_2143: Shew_2143 - hypothetical protein (RefSeq), at 2,489,193 to 2,489,876
_2143
Position (kb) 2487
2488
2489 Strain fitness (log2 ratio) -2
-1
0
1 at 2486.641 kb on - strand, within Shew_2140 at 2486.837 kb on + strand, within Shew_2140 at 2487.891 kb on - strand, within Shew_2141 at 2488.239 kb on - strand, within Shew_2141 at 2488.347 kb on - strand, within Shew_2141 at 2488.489 kb on - strand at 2488.753 kb on - strand at 2488.860 kb on + strand, within Shew_2142 at 2489.364 kb on + strand, within Shew_2143
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,486,641 - Shew_2140 0.55 +0.1 2,486,837 + Shew_2140 0.77 +0.1 2,487,891 - Shew_2141 0.48 -1.9 2,488,239 - Shew_2141 0.78 -1.1 2,488,347 - Shew_2141 0.87 -1.8 2,488,489 - -0.9 2,488,753 - +0.6 2,488,860 + Shew_2142 0.26 +0.7 2,489,364 + Shew_2143 0.25 +1.3
Or see this region's nucleotide sequence