Strain Fitness in Shewanella loihica PV-4 around Shew_2078

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2076 and Shew_2077 overlap by 4 nucleotidesShew_2077 and Shew_2078 are separated by 7 nucleotidesShew_2078 and aspS are separated by 70 nucleotides Shew_2076: Shew_2076 - Holliday junction DNA helicase RuvA (RefSeq), at 2,400,643 to 2,401,260 _2076 Shew_2077: Shew_2077 - crossover junction endodeoxyribonuclease RuvC (RefSeq), at 2,401,257 to 2,401,778 _2077 Shew_2078: Shew_2078 - hypothetical protein (RefSeq), at 2,401,786 to 2,402,532 _2078 Shew_2079: aspS - aspartyl-tRNA synthetase (RefSeq), at 2,402,603 to 2,404,381 aspS Position (kb) 2401 2402 2403Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2401.337 kb on + strand, within Shew_2077at 2401.407 kb on + strand, within Shew_2077at 2401.719 kb on - strand, within Shew_2077at 2401.987 kb on - strand, within Shew_2078

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,401,337 + Shew_2077 0.15 -2.3
2,401,407 + Shew_2077 0.29 -1.5
2,401,719 - Shew_2077 0.89 -4.6
2,401,987 - Shew_2078 0.27 -3.5

Or see this region's nucleotide sequence