Strain Fitness in Shewanella loihica PV-4 around Shew_1590

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrbgA and Shew_1590 are separated by 108 nucleotidesShew_1590 and Shew_1591 are separated by 291 nucleotides Shew_1589: rbgA - ribosomal biogenesis GTPase (RefSeq), at 1,818,553 to 1,819,494 rbgA Shew_1590: Shew_1590 - 2OG-Fe(II) oxygenase (RefSeq), at 1,819,603 to 1,820,442 _1590 Shew_1591: Shew_1591 - bifunctional methionine sulfoxide reductase B/A protein (RefSeq), at 1,820,734 to 1,821,651 _1591 Position (kb) 1819 1820 1821Strain fitness (log2 ratio) -1 0 1at 1819.652 kb on + strandat 1820.310 kb on + strand, within Shew_1590at 1820.402 kb on + strandat 1820.407 kb on + strandat 1820.672 kb on + strandat 1821.224 kb on + strand, within Shew_1591at 1821.291 kb on - strand, within Shew_1591at 1821.318 kb on + strand, within Shew_1591

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,819,652 + +0.7
1,820,310 + Shew_1590 0.84 -0.5
1,820,402 + +0.1
1,820,407 + +1.5
1,820,672 + +0.1
1,821,224 + Shew_1591 0.53 +1.1
1,821,291 - Shew_1591 0.61 +0.5
1,821,318 + Shew_1591 0.64 -0.2

Or see this region's nucleotide sequence