Strain Fitness in Shewanella loihica PV-4 around Shew_1586

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1585 and Shew_1586 are separated by 222 nucleotidesShew_1586 and Shew_1587 are separated by 361 nucleotides Shew_1585: Shew_1585 - hypothetical protein (RefSeq), at 1,815,221 to 1,816,120 _1585 Shew_1586: Shew_1586 - diacylglycerol kinase (RefSeq), at 1,816,343 to 1,816,714 _1586 Shew_1587: Shew_1587 - DNA ligase (RefSeq), at 1,817,076 to 1,817,888 _1587 Position (kb) 1816 1817Strain fitness (log2 ratio) -1 0 1at 1816.390 kb on + strand, within Shew_1586at 1816.642 kb on + strand, within Shew_1586at 1816.649 kb on + strand, within Shew_1586at 1817.162 kb on + strand, within Shew_1587at 1817.580 kb on - strand, within Shew_1587at 1817.600 kb on + strand, within Shew_1587at 1817.612 kb on + strand, within Shew_1587

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,816,390 + Shew_1586 0.13 -0.8
1,816,642 + Shew_1586 0.80 -1.0
1,816,649 + Shew_1586 0.82 -1.5
1,817,162 + Shew_1587 0.11 +0.5
1,817,580 - Shew_1587 0.62 +0.8
1,817,600 + Shew_1587 0.64 +0.4
1,817,612 + Shew_1587 0.66 -0.2

Or see this region's nucleotide sequence