Strain Fitness in Shewanella loihica PV-4 around Shew_1528

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_1527 and Shew_1528 are separated by 34 nucleotidesShew_1528 and Shew_1529 are separated by 19 nucleotidesShew_1529 and Shew_R0050 are separated by 159 nucleotides Shew_1527: Shew_1527 - TolB domain-containing protein (RefSeq), at 1,750,081 to 1,751,406 _1527 Shew_1528: Shew_1528 - OmpA domain-containing protein (RefSeq), at 1,751,441 to 1,751,983 _1528 Shew_1529: Shew_1529 - TPR repeat-containing protein (RefSeq), at 1,752,003 to 1,752,725 _1529 Shew_R0050: Shew_R0050 - tRNA-Lys (RefSeq), at 1,752,885 to 1,752,960 _R0050 Position (kb) 1751 1752Strain fitness (log2 ratio) -2 -1 0 1at 1751.140 kb on - strand, within Shew_1527at 1751.255 kb on + strand, within Shew_1527at 1751.601 kb on + strand, within Shew_1528at 1751.984 kb on + strandat 1752.201 kb on - strand, within Shew_1529at 1752.334 kb on + strand, within Shew_1529at 1752.334 kb on + strand, within Shew_1529at 1752.547 kb on - strand, within Shew_1529

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
1,751,140 - Shew_1527 0.80 -1.1
1,751,255 + Shew_1527 0.89 -2.1
1,751,601 + Shew_1528 0.29 -2.0
1,751,984 + +0.1
1,752,201 - Shew_1529 0.27 -0.4
1,752,334 + Shew_1529 0.46 -0.2
1,752,334 + Shew_1529 0.46 -0.5
1,752,547 - Shew_1529 0.75 +0.2

Or see this region's nucleotide sequence