Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1245 and Shew_1246 are separated by 138 nucleotides Shew_1246 and Shew_1247 are separated by 1 nucleotides Shew_1247 and Shew_1248 are separated by 9 nucleotides
Shew_1245: Shew_1245 - LysR family transcriptional regulator (RefSeq), at 1,443,918 to 1,444,859
_1245
Shew_1246: Shew_1246 - hypothetical protein (RefSeq), at 1,444,998 to 1,445,246
_1246
Shew_1247: Shew_1247 - hypothetical protein (RefSeq), at 1,445,248 to 1,446,180
_1247
Shew_1248: Shew_1248 - phosphoribosylaminoimidazole carboxylase, catalytic subunit (RefSeq), at 1,446,190 to 1,446,672
_1248
Position (kb) 1444
1445
1446 Strain fitness (log2 ratio) -1
0
1 at 1444.133 kb on + strand, within Shew_1245 at 1444.160 kb on + strand, within Shew_1245 at 1444.692 kb on - strand, within Shew_1245 at 1444.692 kb on - strand, within Shew_1245 at 1444.740 kb on + strand, within Shew_1245 at 1445.214 kb on - strand, within Shew_1246 at 1445.296 kb on + strand at 1445.507 kb on - strand, within Shew_1247 at 1445.615 kb on - strand, within Shew_1247 at 1445.780 kb on - strand, within Shew_1247 at 1445.820 kb on + strand, within Shew_1247
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,444,133 + Shew_1245 0.23 -1.6 1,444,160 + Shew_1245 0.26 -0.1 1,444,692 - Shew_1245 0.82 +0.1 1,444,692 - Shew_1245 0.82 +0.2 1,444,740 + Shew_1245 0.87 -1.2 1,445,214 - Shew_1246 0.87 -1.1 1,445,296 + +0.2 1,445,507 - Shew_1247 0.28 -0.4 1,445,615 - Shew_1247 0.39 +0.1 1,445,780 - Shew_1247 0.57 -0.4 1,445,820 + Shew_1247 0.61 +0.3
Or see this region's nucleotide sequence