Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0719 and Shew_0720 are separated by 57 nucleotides Shew_0720 and Shew_0721 are separated by 349 nucleotides
Shew_0719: Shew_0719 - periplasmic binding protein (RefSeq), at 819,519 to 820,343
_0719
Shew_0720: Shew_0720 - hypothetical protein (RefSeq), at 820,401 to 820,787
_0720
Shew_0721: Shew_0721 - RND family efflux transporter MFP subunit (RefSeq), at 821,137 to 822,399
_0721
Position (kb) 820
821 Strain fitness (log2 ratio) -1
0
1 at 819.563 kb on + strand at 819.575 kb on + strand at 819.635 kb on + strand, within Shew_0719 at 819.658 kb on + strand, within Shew_0719 at 819.763 kb on + strand, within Shew_0719 at 819.862 kb on + strand, within Shew_0719 at 819.922 kb on + strand, within Shew_0719 at 820.013 kb on + strand, within Shew_0719 at 820.323 kb on + strand at 820.323 kb on + strand at 820.331 kb on - strand at 820.331 kb on - strand at 820.331 kb on - strand at 820.331 kb on - strand at 820.566 kb on + strand, within Shew_0720 at 820.661 kb on - strand, within Shew_0720 at 821.214 kb on - strand at 821.253 kb on - strand at 821.375 kb on + strand, within Shew_0721 at 821.405 kb on + strand, within Shew_0721 at 821.489 kb on + strand, within Shew_0721 at 821.529 kb on - strand, within Shew_0721 at 821.539 kb on - strand, within Shew_0721 at 821.568 kb on + strand, within Shew_0721 at 821.568 kb on + strand, within Shew_0721 at 821.703 kb on + strand, within Shew_0721
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 819,563 + +0.2 819,575 + +0.4 819,635 + Shew_0719 0.14 +0.2 819,658 + Shew_0719 0.17 +0.4 819,763 + Shew_0719 0.30 +0.4 819,862 + Shew_0719 0.42 +0.1 819,922 + Shew_0719 0.49 +0.2 820,013 + Shew_0719 0.60 -0.0 820,323 + -0.1 820,323 + -0.7 820,331 - -0.4 820,331 - +0.1 820,331 - +0.1 820,331 - -0.0 820,566 + Shew_0720 0.43 +0.0 820,661 - Shew_0720 0.67 -1.2 821,214 - +1.0 821,253 - -0.3 821,375 + Shew_0721 0.19 -0.2 821,405 + Shew_0721 0.21 +0.0 821,489 + Shew_0721 0.28 -0.1 821,529 - Shew_0721 0.31 -0.4 821,539 - Shew_0721 0.32 +0.1 821,568 + Shew_0721 0.34 +0.1 821,568 + Shew_0721 0.34 +0.7 821,703 + Shew_0721 0.45 +0.2
Or see this region's nucleotide sequence