Strain Fitness in Shewanella loihica PV-4 around Shew_0568

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0567 and Shew_0568 are separated by 43 nucleotidesShew_0568 and Shew_0569 are separated by 2 nucleotides Shew_0567: Shew_0567 - GTP-binding protein, HSR1-related (RefSeq), at 642,471 to 643,769 _0567 Shew_0568: Shew_0568 - HflK protein (RefSeq), at 643,813 to 644,955 _0568 Shew_0569: Shew_0569 - HflC protein (RefSeq), at 644,958 to 645,836 _0569 Position (kb) 643 644 645Strain fitness (log2 ratio) -2 -1 0 1at 642.839 kb on + strand, within Shew_0567at 643.324 kb on + strand, within Shew_0567at 643.798 kb on + strandat 643.981 kb on + strand, within Shew_0568at 644.378 kb on + strand, within Shew_0568at 644.606 kb on + strand, within Shew_0568at 644.606 kb on + strand, within Shew_0568at 645.527 kb on + strand, within Shew_0569at 645.680 kb on + strand, within Shew_0569at 645.766 kb on + strandat 645.766 kb on + strandat 645.766 kb on + strandat 645.772 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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642,839 + Shew_0567 0.28 -0.8
643,324 + Shew_0567 0.66 -0.4
643,798 + -0.9
643,981 + Shew_0568 0.15 -0.7
644,378 + Shew_0568 0.49 -0.3
644,606 + Shew_0568 0.69 -1.9
644,606 + Shew_0568 0.69 -0.7
645,527 + Shew_0569 0.65 -0.5
645,680 + Shew_0569 0.82 -0.2
645,766 + +0.2
645,766 + +0.2
645,766 + +0.4
645,772 + +0.3

Or see this region's nucleotide sequence