Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0554 and Shew_0555 overlap by 1 nucleotides Shew_0555 and Shew_0556 are separated by 124 nucleotides
Shew_0554: Shew_0554 - glycerophosphoryl diester phosphodiesterase (RefSeq), at 626,221 to 626,928
_0554
Shew_0555: Shew_0555 - MscS mechanosensitive ion channel (RefSeq), at 626,928 to 630,110
_0555
Shew_0556: Shew_0556 - hypothetical protein (RefSeq), at 630,235 to 631,125
_0556
Position (kb) 626
627
628
629
630
631 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 626.349 kb on - strand, within Shew_0554 at 626.505 kb on + strand, within Shew_0554 at 626.505 kb on + strand, within Shew_0554 at 627.153 kb on + strand at 627.521 kb on + strand, within Shew_0555 at 627.618 kb on - strand, within Shew_0555 at 627.926 kb on + strand, within Shew_0555 at 628.073 kb on + strand, within Shew_0555 at 628.073 kb on + strand, within Shew_0555 at 628.137 kb on + strand, within Shew_0555 at 628.144 kb on + strand, within Shew_0555 at 628.192 kb on + strand, within Shew_0555 at 628.474 kb on + strand, within Shew_0555 at 628.592 kb on - strand, within Shew_0555 at 628.978 kb on + strand, within Shew_0555 at 629.773 kb on - strand, within Shew_0555 at 629.842 kb on - strand at 629.866 kb on + strand at 630.036 kb on + strand at 630.546 kb on + strand, within Shew_0556 at 630.645 kb on - strand, within Shew_0556 at 630.683 kb on + strand, within Shew_0556
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 626,349 - Shew_0554 0.18 -0.7 626,505 + Shew_0554 0.40 +0.3 626,505 + Shew_0554 0.40 +1.0 627,153 + -0.9 627,521 + Shew_0555 0.19 +0.6 627,618 - Shew_0555 0.22 -1.2 627,926 + Shew_0555 0.31 -1.3 628,073 + Shew_0555 0.36 -2.8 628,073 + Shew_0555 0.36 -0.5 628,137 + Shew_0555 0.38 -2.5 628,144 + Shew_0555 0.38 -2.2 628,192 + Shew_0555 0.40 -0.1 628,474 + Shew_0555 0.49 -0.0 628,592 - Shew_0555 0.52 -0.8 628,978 + Shew_0555 0.64 -1.1 629,773 - Shew_0555 0.89 -1.2 629,842 - -1.3 629,866 + -1.0 630,036 + -2.0 630,546 + Shew_0556 0.35 +0.1 630,645 - Shew_0556 0.46 -0.0 630,683 + Shew_0556 0.50 -0.3
Or see this region's nucleotide sequence