Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0460 and Shew_0461 are separated by 72 nucleotides Shew_0461 and Shew_0462 are separated by 312 nucleotides Shew_0462 and Shew_0463 are separated by 118 nucleotides
Shew_0460: Shew_0460 - hypothetical protein (RefSeq), at 516,184 to 518,583
_0460
Shew_0461: Shew_0461 - hypothetical protein (RefSeq), at 518,656 to 519,195
_0461
Shew_0462: Shew_0462 - hypothetical protein (RefSeq), at 519,508 to 519,813
_0462
Shew_0463: Shew_0463 - hypothetical protein (RefSeq), at 519,932 to 520,315
_0463
Position (kb) 518
519
520 Strain fitness (log2 ratio) -2
-1
0
1 at 517.935 kb on - strand, within Shew_0460 at 518.174 kb on + strand, within Shew_0460 at 518.339 kb on - strand, within Shew_0460 at 518.791 kb on - strand, within Shew_0461 at 518.833 kb on + strand, within Shew_0461 at 519.049 kb on + strand, within Shew_0461 at 519.157 kb on - strand at 519.454 kb on + strand at 519.640 kb on - strand, within Shew_0462 at 520.076 kb on + strand, within Shew_0463 at 520.084 kb on - strand, within Shew_0463 at 520.113 kb on + strand, within Shew_0463
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 517,935 - Shew_0460 0.73 +0.8 518,174 + Shew_0460 0.83 +0.1 518,339 - Shew_0460 0.90 -0.2 518,791 - Shew_0461 0.25 -0.1 518,833 + Shew_0461 0.33 -0.7 519,049 + Shew_0461 0.73 -0.7 519,157 - -0.2 519,454 + -0.9 519,640 - Shew_0462 0.43 +0.9 520,076 + Shew_0463 0.38 +0.1 520,084 - Shew_0463 0.40 -0.3 520,113 + Shew_0463 0.47 -2.1
Or see this region's nucleotide sequence