Strain Fitness in Shewanella loihica PV-4 around Shew_0228

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0227 and Shew_0228 are separated by 88 nucleotidesShew_0228 and rnpB are separated by 109 nucleotidesrnpB and Shew_0229 are separated by 96 nucleotides Shew_0227: Shew_0227 - LppC family lipoprotein (RefSeq), at 239,550 to 241,454 _0227 Shew_0228: Shew_0228 - uroporphyrin-III C/tetrapyrrole methyltransferase (RefSeq), at 241,543 to 242,385 _0228 Shew_R0013: rnpB - RNA component of RNaseP (NCBI), at 242,495 to 242,800 rnpB Shew_0229: Shew_0229 - extracellular solute-binding protein (RefSeq), at 242,897 to 243,706 _0229 Position (kb) 241 242 243Strain fitness (log2 ratio) -1 0 1at 241.621 kb on - strandat 241.771 kb on + strand, within Shew_0228at 241.921 kb on - strand, within Shew_0228at 242.158 kb on - strand, within Shew_0228at 242.233 kb on + strand, within Shew_0228at 242.331 kb on - strandat 242.416 kb on + strandat 242.904 kb on + strandat 243.030 kb on - strand, within Shew_0229

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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241,621 - -0.3
241,771 + Shew_0228 0.27 -0.3
241,921 - Shew_0228 0.45 -0.4
242,158 - Shew_0228 0.73 -0.5
242,233 + Shew_0228 0.82 -1.5
242,331 - -1.0
242,416 + +0.1
242,904 + +0.1
243,030 - Shew_0229 0.16 -0.1

Or see this region's nucleotide sequence