Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0192 and Shew_0193 are separated by 411 nucleotides Shew_0193 and Shew_0194 are separated by 17 nucleotides Shew_0194 and Shew_0195 overlap by 1 nucleotides
Shew_0192: Shew_0192 - TPR repeat-containing protein (RefSeq), at 197,601 to 198,851
_0192
Shew_0193: Shew_0193 - cytochrome c-type biogenesis protein CcmF (RefSeq), at 199,263 to 201,239
_0193
Shew_0194: Shew_0194 - periplasmic protein thiol--disulphide oxidoreductase DsbE (RefSeq), at 201,257 to 201,814
_0194
Shew_0195: Shew_0195 - cytochrome C biogenesis protein (RefSeq), at 201,814 to 202,293
_0195
Position (kb) 199
200
201
202 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 198.333 kb on + strand, within Shew_0192 at 198.426 kb on - strand, within Shew_0192 at 198.508 kb on - strand, within Shew_0192 at 198.552 kb on + strand, within Shew_0192 at 198.555 kb on - strand, within Shew_0192 at 198.560 kb on - strand, within Shew_0192 at 198.808 kb on - strand at 198.813 kb on - strand at 198.818 kb on - strand at 198.957 kb on - strand at 198.991 kb on - strand at 199.039 kb on + strand at 199.061 kb on + strand at 199.120 kb on - strand at 199.177 kb on + strand at 200.631 kb on - strand, within Shew_0193 at 200.692 kb on - strand, within Shew_0193 at 200.882 kb on + strand, within Shew_0193 at 200.939 kb on + strand, within Shew_0193 at 200.959 kb on - strand, within Shew_0193 at 201.178 kb on + strand at 201.399 kb on + strand, within Shew_0194 at 201.790 kb on + strand at 201.790 kb on + strand at 201.790 kb on + strand at 201.790 kb on + strand at 201.959 kb on + strand, within Shew_0195
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 198,333 + Shew_0192 0.59 +0.6 198,426 - Shew_0192 0.66 +0.0 198,508 - Shew_0192 0.73 +0.7 198,552 + Shew_0192 0.76 -0.1 198,555 - Shew_0192 0.76 +0.1 198,560 - Shew_0192 0.77 -0.1 198,808 - -0.1 198,813 - -1.9 198,818 - +0.5 198,957 - -0.3 198,991 - +0.1 199,039 + -0.2 199,061 + -0.4 199,120 - +0.4 199,177 + +0.3 200,631 - Shew_0193 0.69 +2.9 200,692 - Shew_0193 0.72 -0.8 200,882 + Shew_0193 0.82 -0.5 200,939 + Shew_0193 0.85 -1.1 200,959 - Shew_0193 0.86 -1.7 201,178 + -1.2 201,399 + Shew_0194 0.25 +0.9 201,790 + +0.3 201,790 + +0.0 201,790 + -0.3 201,790 + +0.0 201,959 + Shew_0195 0.30 +0.1
Or see this region's nucleotide sequence