Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_926

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
1,089,387	+		Pf6N2E2_925	0.72	+1.6
1,089,388	-		Pf6N2E2_925	0.73	-0.3
1,089,391	+		Pf6N2E2_925	0.73	+1.7
1,089,391	+		Pf6N2E2_925	0.73	+0.5
1,089,391	+		Pf6N2E2_925	0.73	+1.3
1,089,392	-		Pf6N2E2_925	0.73	-0.3
1,089,392	-		Pf6N2E2_925	0.73	-2.3
1,089,392	-		Pf6N2E2_925	0.73	-0.7
1,089,392	-		Pf6N2E2_925	0.73	-0.6
1,089,392	-		Pf6N2E2_925	0.73	+0.0
1,089,395	-		Pf6N2E2_925	0.74	+0.3
1,089,395	-		Pf6N2E2_925	0.74	-0.3
1,089,395	-		Pf6N2E2_925	0.74	-2.6
1,089,395	-		Pf6N2E2_925	0.74	-0.6
1,089,395	-		Pf6N2E2_925	0.74	+1.2
1,089,447	+		Pf6N2E2_925	0.80	+1.4
1,089,575	+				+0.2
1,089,601	-				+0.0
1,089,607	+				+1.0
1,089,683	+				+1.9
1,089,787	+				+0.9
1,089,871	-				+0.4
1,089,879	+				+3.1
1,089,879	+				+2.4
1,089,880	-				+1.3
1,089,886	+				+1.3
1,089,886	+				+1.1
1,089,887	-				-0.2
1,089,891	+				+2.3
1,089,891	+				+4.6
1,089,891	+				+2.6
1,089,892	-				-0.5
1,089,892	-				-2.4
1,089,892	-				-0.3
1,089,892	-				-0.1
1,089,892	-				-1.4
1,089,892	-				-0.5
1,089,896	-				-1.2
1,090,151	+				+4.8
1,090,151	+				+4.3
1,090,489	-		Pf6N2E2_926	0.14	-0.8
1,090,509	-		Pf6N2E2_926	0.17	+0.6
1,090,530	+		Pf6N2E2_926	0.19	+2.3
1,090,646	+		Pf6N2E2_926	0.34	+1.4
1,090,646	+		Pf6N2E2_926	0.34	+3.4
1,090,646	+		Pf6N2E2_926	0.34	+2.6
1,090,646	+		Pf6N2E2_926	0.34	+2.6
1,090,646	+		Pf6N2E2_926	0.34	+4.0
1,090,646	+		Pf6N2E2_926	0.34	+2.3
1,090,646	+		Pf6N2E2_926	0.34	+1.2
1,090,647	-		Pf6N2E2_926	0.34	-4.1
1,090,647	-		Pf6N2E2_926	0.34	-1.6
1,090,647	-		Pf6N2E2_926	0.34	-0.9
1,090,647	-		Pf6N2E2_926	0.34	-0.3
1,090,762	+		Pf6N2E2_926	0.48	+3.0
1,090,763	-		Pf6N2E2_926	0.49	-2.3
1,090,773	+		Pf6N2E2_926	0.50	+3.0
1,090,774	-		Pf6N2E2_926	0.50	-1.3
1,090,798	+		Pf6N2E2_926	0.53	+2.6
1,090,798	+		Pf6N2E2_926	0.53	+2.7
1,090,799	-		Pf6N2E2_926	0.53	-2.2
1,090,807	-		Pf6N2E2_926	0.54	-0.1
1,090,815	+		Pf6N2E2_926	0.55	+1.9
1,090,815	+		Pf6N2E2_926	0.55	+2.5
1,090,895	+		Pf6N2E2_926	0.65	+3.1
1,090,948	+		Pf6N2E2_926	0.72	+3.4
1,090,949	-		Pf6N2E2_926	0.72	+0.2
1,090,949	-		Pf6N2E2_926	0.72	-1.7
1,090,964	+		Pf6N2E2_926	0.74	+3.5
1,090,998	-		Pf6N2E2_926	0.78	-0.1
1,091,020	+		Pf6N2E2_926	0.81	+5.1
1,091,028	+		Pf6N2E2_926	0.82	+5.1
1,091,028	+		Pf6N2E2_926	0.82	+4.8
1,091,045	+		Pf6N2E2_926	0.84	+4.2
1,091,046	-		Pf6N2E2_926	0.84	-2.1
1,091,046	-		Pf6N2E2_926	0.84	-0.9
1,091,046	-		Pf6N2E2_926	0.84	-2.4
1,091,127	+				+7.0
1,091,180	+				+4.4
1,091,181	-				-2.3
1,091,184	+				+4.9
1,091,241	+				+3.3
1,091,241	+				+3.9
1,091,242	-				+0.3
1,091,242	-				-1.5
1,091,274	+				+0.9
1,091,274	+				+2.3
1,091,274	+				+2.7
1,091,275	-				-1.3
1,091,275	-				+0.8
1,091,275	-				-1.3
1,091,279	-				-0.3
1,091,287	+				+2.1
1,091,287	+				+1.3
1,091,288	-				-2.0
1,091,291	+				+3.0
1,091,292	-				-0.5
1,091,336	+				-0.3
1,091,580	+				+0.2
1,091,607	-				-2.6
1,091,699	+				+1.3
1,091,699	+				+0.2
1,091,732	+				-1.3
1,091,732	+				+0.2
1,091,743	+				+0.5
1,091,743	+				-2.1
1,091,743	+				-0.3
1,091,743	+				-1.7
1,091,743	+				+0.5
1,091,749	+				-2.6
1,091,750	-				-1.9
1,091,750	-				+0.3
1,091,750	-				-0.9
1,091,756	-				-1.1
1,091,768	+				-1.7
1,091,769	-				-0.6
1,091,797	+				-0.4
1,091,797	+				-0.3
1,091,797	+				-0.3
1,091,797	+				-1.0
1,091,797	+				-0.7
1,091,798	-				-2.3
1,091,816	+				-1.2
1,091,868	-				-0.7
1,091,877	+				+0.2
1,091,877	+				-0.3
1,091,878	-				-0.6
1,091,959	+		Pf6N2E2_927	0.44	+1.0
1,091,959	+		Pf6N2E2_927	0.44	-0.4
1,091,996	+		Pf6N2E2_927	0.69	-1.6
1,091,997	-		Pf6N2E2_927	0.69	-0.3
1,092,064	+				-0.7
1,092,064	+				-0.3
1,092,064	+				-1.3
1,092,065	-				+0.6
1,092,065	-				+1.6
1,092,068	+				-2.3
1,092,068	+				-0.5
1,092,069	-				-0.6
1,092,069	-				+0.7
1,092,069	-				+0.1
1,092,080	+				-0.3
1,092,080	+				+1.4
1,092,080	+				-0.1
1,092,080	+				-1.9
1,092,080	+				+0.3
1,092,081	-				-0.3
1,092,110	+				+0.7
1,092,110	+				-0.2
1,092,111	-				-0.1
1,092,111	-				-1.4
1,092,111	-				-1.1
1,092,111	-				-0.8
1,092,114	+				+0.1
1,092,114	+				-0.3
1,092,114	+				-1.3