Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_844

Experiment: Doxycycline hyclate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_843 and Pf6N2E2_844 are separated by 90 nucleotidesPf6N2E2_844 and Pf6N2E2_845 are separated by 112 nucleotidesPf6N2E2_845 and Pf6N2E2_846 are separated by 311 nucleotides Pf6N2E2_843 - Phosphoglycolate phosphatase, archaeal type (EC 3.1.3.18), at 987,563 to 989,320 _843 Pf6N2E2_844 - Ribose-phosphate pyrophosphokinase (EC 2.7.6.1), at 989,411 to 990,403 _844 Pf6N2E2_845 - phosphoribosyltransferase, at 990,516 to 991,082 _845 Pf6N2E2_846 - Universal stress protein family 5, at 991,394 to 992,284 _846 Position (kb) 989 990 991Strain fitness (log2 ratio) -2 -1 0 1 2at 988.458 kb on + strand, within Pf6N2E2_843at 988.788 kb on - strand, within Pf6N2E2_843at 989.042 kb on + strand, within Pf6N2E2_843at 989.042 kb on + strand, within Pf6N2E2_843at 989.042 kb on + strand, within Pf6N2E2_843at 989.042 kb on + strand, within Pf6N2E2_843at 989.101 kb on + strand, within Pf6N2E2_843at 989.109 kb on + strand, within Pf6N2E2_843at 989.109 kb on + strand, within Pf6N2E2_843at 989.207 kb on + strandat 989.207 kb on + strandat 989.207 kb on + strandat 989.208 kb on - strandat 989.320 kb on + strandat 989.320 kb on + strandat 989.320 kb on + strandat 989.321 kb on - strandat 989.321 kb on - strandat 989.611 kb on + strand, within Pf6N2E2_844at 989.612 kb on - strand, within Pf6N2E2_844at 989.812 kb on + strand, within Pf6N2E2_844at 989.813 kb on - strand, within Pf6N2E2_844at 989.885 kb on + strand, within Pf6N2E2_844at 989.885 kb on + strand, within Pf6N2E2_844at 989.885 kb on + strand, within Pf6N2E2_844at 989.886 kb on - strand, within Pf6N2E2_844at 989.886 kb on - strand, within Pf6N2E2_844at 989.886 kb on - strand, within Pf6N2E2_844at 989.886 kb on - strand, within Pf6N2E2_844at 990.055 kb on - strand, within Pf6N2E2_844at 990.055 kb on - strand, within Pf6N2E2_844at 990.114 kb on + strand, within Pf6N2E2_844at 990.220 kb on - strand, within Pf6N2E2_844at 990.220 kb on - strand, within Pf6N2E2_844at 990.236 kb on + strand, within Pf6N2E2_844at 990.294 kb on + strand, within Pf6N2E2_844at 990.295 kb on - strand, within Pf6N2E2_844at 990.295 kb on - strand, within Pf6N2E2_844at 990.295 kb on - strand, within Pf6N2E2_844at 990.354 kb on + strandat 990.354 kb on + strandat 990.354 kb on + strandat 990.354 kb on + strandat 990.355 kb on - strandat 990.355 kb on - strandat 990.453 kb on + strandat 990.454 kb on - strandat 990.454 kb on - strandat 990.454 kb on - strandat 990.554 kb on - strandat 990.554 kb on - strandat 990.554 kb on - strandat 990.554 kb on - strandat 990.615 kb on + strand, within Pf6N2E2_845at 990.615 kb on + strand, within Pf6N2E2_845at 990.616 kb on - strand, within Pf6N2E2_845at 990.616 kb on - strand, within Pf6N2E2_845at 990.616 kb on - strand, within Pf6N2E2_845at 990.654 kb on - strand, within Pf6N2E2_845at 990.670 kb on - strand, within Pf6N2E2_845at 990.677 kb on + strand, within Pf6N2E2_845at 990.773 kb on + strand, within Pf6N2E2_845at 990.773 kb on + strand, within Pf6N2E2_845at 990.773 kb on + strand, within Pf6N2E2_845at 990.823 kb on + strand, within Pf6N2E2_845at 990.823 kb on + strand, within Pf6N2E2_845at 990.824 kb on - strand, within Pf6N2E2_845at 990.827 kb on + strand, within Pf6N2E2_845at 990.827 kb on + strand, within Pf6N2E2_845at 990.827 kb on + strand, within Pf6N2E2_845at 990.827 kb on + strand, within Pf6N2E2_845at 990.827 kb on + strand, within Pf6N2E2_845at 990.827 kb on + strand, within Pf6N2E2_845at 990.827 kb on + strand, within Pf6N2E2_845at 990.827 kb on + strand, within Pf6N2E2_845at 990.828 kb on - strand, within Pf6N2E2_845at 990.828 kb on - strand, within Pf6N2E2_845at 990.828 kb on - strand, within Pf6N2E2_845at 990.828 kb on - strand, within Pf6N2E2_845at 990.828 kb on - strand, within Pf6N2E2_845at 990.913 kb on + strand, within Pf6N2E2_845at 990.913 kb on + strand, within Pf6N2E2_845at 990.914 kb on - strand, within Pf6N2E2_845at 990.914 kb on - strand, within Pf6N2E2_845at 990.914 kb on - strand, within Pf6N2E2_845at 990.914 kb on - strand, within Pf6N2E2_845at 990.914 kb on - strand, within Pf6N2E2_845at 991.046 kb on - strandat 991.046 kb on - strandat 991.046 kb on - strandat 991.046 kb on - strandat 991.071 kb on + strandat 991.072 kb on - strandat 991.101 kb on - strandat 991.113 kb on + strandat 991.113 kb on + strandat 991.113 kb on + strandat 991.114 kb on - strandat 991.114 kb on - strandat 991.114 kb on - strandat 991.117 kb on + strandat 991.117 kb on + strandat 991.118 kb on - strandat 991.118 kb on - strandat 991.126 kb on + strandat 991.255 kb on - strandat 991.255 kb on - strandat 991.255 kb on - strandat 991.261 kb on + strandat 991.261 kb on + strandat 991.262 kb on - strandat 991.262 kb on - strandat 991.262 kb on - strandat 991.262 kb on - strandat 991.262 kb on - strandat 991.262 kb on - strandat 991.262 kb on - strandat 991.263 kb on + strandat 991.263 kb on + strandat 991.263 kb on + strandat 991.263 kb on + strandat 991.263 kb on + strandat 991.263 kb on + strandat 991.264 kb on - strandat 991.264 kb on - strandat 991.264 kb on - strandat 991.264 kb on - strandat 991.264 kb on - strandat 991.264 kb on - strandat 991.334 kb on + strandat 991.334 kb on + strandat 991.334 kb on + strandat 991.335 kb on - strandat 991.335 kb on - strandat 991.335 kb on - strandat 991.335 kb on - strandat 991.403 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml
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988,458 + Pf6N2E2_843 0.51 +0.4
988,788 - Pf6N2E2_843 0.70 +1.3
989,042 + Pf6N2E2_843 0.84 +0.4
989,042 + Pf6N2E2_843 0.84 -0.0
989,042 + Pf6N2E2_843 0.84 +0.7
989,042 + Pf6N2E2_843 0.84 -0.4
989,101 + Pf6N2E2_843 0.87 +0.9
989,109 + Pf6N2E2_843 0.88 -0.3
989,109 + Pf6N2E2_843 0.88 -1.3
989,207 + -0.2
989,207 + +1.5
989,207 + +0.6
989,208 - +1.2
989,320 + +0.3
989,320 + +0.4
989,320 + +0.3
989,321 - +0.2
989,321 - +2.3
989,611 + Pf6N2E2_844 0.20 +1.0
989,612 - Pf6N2E2_844 0.20 -1.3
989,812 + Pf6N2E2_844 0.40 +0.1
989,813 - Pf6N2E2_844 0.40 -1.7
989,885 + Pf6N2E2_844 0.48 -0.1
989,885 + Pf6N2E2_844 0.48 +0.3
989,885 + Pf6N2E2_844 0.48 +0.3
989,886 - Pf6N2E2_844 0.48 -0.6
989,886 - Pf6N2E2_844 0.48 +0.5
989,886 - Pf6N2E2_844 0.48 -0.3
989,886 - Pf6N2E2_844 0.48 +0.6
990,055 - Pf6N2E2_844 0.65 -0.2
990,055 - Pf6N2E2_844 0.65 -0.3
990,114 + Pf6N2E2_844 0.71 +0.0
990,220 - Pf6N2E2_844 0.81 +1.5
990,220 - Pf6N2E2_844 0.81 +1.4
990,236 + Pf6N2E2_844 0.83 -1.1
990,294 + Pf6N2E2_844 0.89 +0.7
990,295 - Pf6N2E2_844 0.89 +0.8
990,295 - Pf6N2E2_844 0.89 +0.8
990,295 - Pf6N2E2_844 0.89 -0.9
990,354 + -0.3
990,354 + +0.7
990,354 + -0.2
990,354 + -1.3
990,355 - +0.4
990,355 - -0.5
990,453 + -0.6
990,454 - +2.5
990,454 - -0.1
990,454 - -0.4
990,554 - -0.1
990,554 - +0.3
990,554 - -0.3
990,554 - +0.1
990,615 + Pf6N2E2_845 0.17 +0.9
990,615 + Pf6N2E2_845 0.17 -0.1
990,616 - Pf6N2E2_845 0.18 -0.3
990,616 - Pf6N2E2_845 0.18 +0.4
990,616 - Pf6N2E2_845 0.18 +1.0
990,654 - Pf6N2E2_845 0.24 +0.3
990,670 - Pf6N2E2_845 0.27 -1.2
990,677 + Pf6N2E2_845 0.28 +2.0
990,773 + Pf6N2E2_845 0.45 -0.0
990,773 + Pf6N2E2_845 0.45 -1.3
990,773 + Pf6N2E2_845 0.45 +0.1
990,823 + Pf6N2E2_845 0.54 +0.1
990,823 + Pf6N2E2_845 0.54 +1.0
990,824 - Pf6N2E2_845 0.54 -0.1
990,827 + Pf6N2E2_845 0.55 -2.6
990,827 + Pf6N2E2_845 0.55 -0.1
990,827 + Pf6N2E2_845 0.55 +0.5
990,827 + Pf6N2E2_845 0.55 -0.0
990,827 + Pf6N2E2_845 0.55 -0.7
990,827 + Pf6N2E2_845 0.55 +0.3
990,827 + Pf6N2E2_845 0.55 -1.9
990,827 + Pf6N2E2_845 0.55 -0.1
990,828 - Pf6N2E2_845 0.55 +0.0
990,828 - Pf6N2E2_845 0.55 -1.5
990,828 - Pf6N2E2_845 0.55 -0.1
990,828 - Pf6N2E2_845 0.55 -0.9
990,828 - Pf6N2E2_845 0.55 +0.6
990,913 + Pf6N2E2_845 0.70 +1.2
990,913 + Pf6N2E2_845 0.70 -1.3
990,914 - Pf6N2E2_845 0.70 -0.3
990,914 - Pf6N2E2_845 0.70 -1.1
990,914 - Pf6N2E2_845 0.70 -0.5
990,914 - Pf6N2E2_845 0.70 -0.1
990,914 - Pf6N2E2_845 0.70 -1.3
991,046 - -0.5
991,046 - -0.9
991,046 - -0.2
991,046 - +0.7
991,071 + +1.7
991,072 - +1.0
991,101 - -0.3
991,113 + +0.5
991,113 + -1.3
991,113 + -0.3
991,114 - -1.6
991,114 - +1.2
991,114 - +2.0
991,117 + +1.1
991,117 + -0.9
991,118 - -1.3
991,118 - +0.7
991,126 + +1.2
991,255 - -0.5
991,255 - +1.3
991,255 - +0.7
991,261 + -0.5
991,261 + -0.6
991,262 - +1.4
991,262 - +0.7
991,262 - +1.4
991,262 - -0.8
991,262 - -0.5
991,262 - -0.1
991,262 - +0.0
991,263 + -0.0
991,263 + +0.4
991,263 + +0.6
991,263 + -0.3
991,263 + -0.3
991,263 + +1.3
991,264 - +0.4
991,264 - +0.8
991,264 - +1.3
991,264 - -1.3
991,264 - -0.8
991,264 - -0.4
991,334 + +0.8
991,334 + +0.6
991,334 + -0.1
991,335 - -0.5
991,335 - +0.2
991,335 - +1.1
991,335 - +0.0
991,403 + -0.3

Or see this region's nucleotide sequence