Experiment: Doxycycline hyclate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_780 and Pf6N2E2_781 are separated by 335 nucleotides Pf6N2E2_781 and Pf6N2E2_782 are separated by 235 nucleotides
Pf6N2E2_780 - FIG00955564: hypothetical protein, at 890,228 to 892,219
_780
Pf6N2E2_781 - Outer membrane autotransporter barrel, at 892,555 to 894,657
_781
Pf6N2E2_782 - hypothetical protein, at 894,893 to 896,386
_782
Position (kb) 892
893
894
895 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 891.569 kb on + strand, within Pf6N2E2_780 at 891.663 kb on - strand, within Pf6N2E2_780 at 891.811 kb on - strand, within Pf6N2E2_780 at 891.842 kb on + strand, within Pf6N2E2_780 at 891.843 kb on - strand, within Pf6N2E2_780 at 891.855 kb on - strand, within Pf6N2E2_780 at 891.883 kb on - strand, within Pf6N2E2_780 at 891.896 kb on + strand, within Pf6N2E2_780 at 892.044 kb on + strand at 892.052 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.077 kb on - strand at 892.077 kb on - strand at 892.077 kb on - strand at 892.077 kb on - strand at 892.077 kb on - strand at 892.124 kb on + strand at 892.124 kb on + strand at 892.124 kb on + strand at 892.125 kb on - strand at 892.130 kb on + strand at 892.130 kb on + strand at 892.130 kb on + strand at 892.130 kb on + strand at 892.131 kb on - strand at 892.131 kb on - strand at 892.131 kb on - strand at 892.131 kb on - strand at 892.131 kb on - strand at 892.137 kb on + strand at 892.137 kb on + strand at 892.137 kb on + strand at 892.137 kb on + strand at 892.137 kb on + strand at 892.137 kb on + strand at 892.138 kb on - strand at 892.138 kb on - strand at 892.153 kb on + strand at 892.153 kb on + strand at 892.191 kb on + strand at 892.191 kb on + strand at 892.192 kb on - strand at 892.192 kb on - strand at 892.192 kb on - strand at 892.232 kb on - strand at 892.280 kb on + strand at 892.331 kb on + strand at 892.331 kb on + strand at 892.331 kb on + strand at 892.331 kb on + strand at 892.332 kb on - strand at 892.332 kb on - strand at 892.335 kb on + strand at 892.335 kb on + strand at 892.335 kb on + strand at 892.336 kb on - strand at 892.349 kb on + strand at 892.356 kb on + strand at 892.371 kb on + strand at 892.374 kb on + strand at 892.374 kb on + strand at 892.374 kb on + strand at 892.375 kb on - strand at 892.375 kb on - strand at 892.420 kb on + strand at 892.451 kb on + strand at 892.452 kb on - strand at 892.475 kb on + strand at 892.482 kb on + strand at 892.483 kb on - strand at 892.483 kb on - strand at 892.483 kb on - strand at 892.484 kb on + strand at 892.521 kb on + strand at 892.551 kb on + strand at 892.552 kb on - strand at 892.552 kb on - strand at 892.603 kb on + strand at 892.617 kb on + strand at 892.688 kb on + strand at 892.689 kb on - strand at 892.689 kb on - strand at 892.740 kb on + strand at 892.743 kb on + strand at 892.743 kb on + strand at 892.744 kb on - strand at 892.744 kb on - strand at 892.785 kb on + strand, within Pf6N2E2_781 at 892.787 kb on + strand, within Pf6N2E2_781 at 893.019 kb on + strand, within Pf6N2E2_781 at 893.052 kb on - strand, within Pf6N2E2_781 at 893.196 kb on + strand, within Pf6N2E2_781 at 893.197 kb on - strand, within Pf6N2E2_781 at 893.346 kb on + strand, within Pf6N2E2_781 at 893.346 kb on + strand, within Pf6N2E2_781 at 893.347 kb on - strand, within Pf6N2E2_781 at 893.347 kb on - strand, within Pf6N2E2_781 at 893.440 kb on + strand, within Pf6N2E2_781 at 893.440 kb on + strand, within Pf6N2E2_781 at 893.441 kb on - strand, within Pf6N2E2_781 at 893.441 kb on - strand, within Pf6N2E2_781 at 893.442 kb on + strand, within Pf6N2E2_781 at 893.442 kb on + strand, within Pf6N2E2_781 at 893.442 kb on + strand, within Pf6N2E2_781 at 893.443 kb on - strand, within Pf6N2E2_781 at 893.526 kb on + strand, within Pf6N2E2_781 at 893.527 kb on - strand, within Pf6N2E2_781 at 893.553 kb on + strand, within Pf6N2E2_781 at 893.553 kb on + strand, within Pf6N2E2_781 at 893.553 kb on + strand, within Pf6N2E2_781 at 893.553 kb on + strand, within Pf6N2E2_781 at 893.553 kb on + strand, within Pf6N2E2_781 at 893.553 kb on + strand, within Pf6N2E2_781 at 893.554 kb on - strand, within Pf6N2E2_781 at 893.673 kb on + strand, within Pf6N2E2_781 at 893.673 kb on + strand, within Pf6N2E2_781 at 893.673 kb on + strand, within Pf6N2E2_781 at 893.677 kb on + strand, within Pf6N2E2_781 at 893.677 kb on + strand, within Pf6N2E2_781 at 893.677 kb on + strand, within Pf6N2E2_781 at 893.677 kb on + strand, within Pf6N2E2_781 at 893.677 kb on + strand, within Pf6N2E2_781 at 893.677 kb on + strand, within Pf6N2E2_781 at 893.678 kb on - strand, within Pf6N2E2_781 at 893.678 kb on - strand, within Pf6N2E2_781 at 893.678 kb on - strand, within Pf6N2E2_781 at 893.678 kb on - strand, within Pf6N2E2_781 at 893.683 kb on + strand, within Pf6N2E2_781 at 893.683 kb on + strand, within Pf6N2E2_781 at 893.717 kb on - strand, within Pf6N2E2_781 at 893.717 kb on - strand, within Pf6N2E2_781 at 893.878 kb on + strand, within Pf6N2E2_781 at 893.878 kb on + strand, within Pf6N2E2_781 at 893.879 kb on - strand, within Pf6N2E2_781 at 893.920 kb on + strand, within Pf6N2E2_781 at 893.921 kb on - strand, within Pf6N2E2_781 at 893.922 kb on + strand, within Pf6N2E2_781 at 893.922 kb on + strand, within Pf6N2E2_781 at 893.922 kb on + strand, within Pf6N2E2_781 at 893.923 kb on - strand, within Pf6N2E2_781 at 894.013 kb on + strand, within Pf6N2E2_781 at 894.015 kb on + strand, within Pf6N2E2_781 at 894.015 kb on + strand, within Pf6N2E2_781 at 894.070 kb on + strand, within Pf6N2E2_781 at 894.082 kb on + strand, within Pf6N2E2_781 at 894.112 kb on + strand, within Pf6N2E2_781 at 894.112 kb on + strand, within Pf6N2E2_781 at 894.115 kb on + strand, within Pf6N2E2_781 at 894.115 kb on + strand, within Pf6N2E2_781 at 894.116 kb on - strand, within Pf6N2E2_781 at 894.199 kb on + strand, within Pf6N2E2_781 at 894.199 kb on + strand, within Pf6N2E2_781 at 894.243 kb on + strand, within Pf6N2E2_781 at 894.243 kb on + strand, within Pf6N2E2_781 at 894.262 kb on + strand, within Pf6N2E2_781 at 894.262 kb on + strand, within Pf6N2E2_781 at 894.262 kb on + strand, within Pf6N2E2_781 at 894.358 kb on + strand, within Pf6N2E2_781 at 894.358 kb on + strand, within Pf6N2E2_781 at 894.359 kb on - strand, within Pf6N2E2_781 at 894.492 kb on + strand at 894.492 kb on + strand at 894.492 kb on + strand at 894.492 kb on + strand at 894.492 kb on + strand at 894.592 kb on + strand at 894.629 kb on + strand at 894.646 kb on + strand at 894.669 kb on + strand at 894.803 kb on - strand at 894.803 kb on - strand at 894.827 kb on + strand at 894.827 kb on + strand at 894.827 kb on + strand at 894.827 kb on + strand at 894.847 kb on + strand at 894.847 kb on + strand at 894.882 kb on + strand at 894.883 kb on - strand at 894.947 kb on + strand at 895.009 kb on + strand at 895.010 kb on - strand at 895.010 kb on - strand at 895.010 kb on - strand at 895.010 kb on - strand at 895.043 kb on - strand, within Pf6N2E2_782 at 895.101 kb on - strand, within Pf6N2E2_782 at 895.169 kb on + strand, within Pf6N2E2_782 at 895.170 kb on - strand, within Pf6N2E2_782 at 895.170 kb on - strand, within Pf6N2E2_782 at 895.186 kb on - strand, within Pf6N2E2_782 at 895.186 kb on - strand, within Pf6N2E2_782 at 895.212 kb on - strand, within Pf6N2E2_782 at 895.221 kb on + strand, within Pf6N2E2_782 at 895.221 kb on + strand, within Pf6N2E2_782 at 895.221 kb on + strand, within Pf6N2E2_782 at 895.229 kb on + strand, within Pf6N2E2_782 at 895.229 kb on + strand, within Pf6N2E2_782 at 895.230 kb on - strand, within Pf6N2E2_782 at 895.261 kb on + strand, within Pf6N2E2_782 at 895.262 kb on - strand, within Pf6N2E2_782 at 895.358 kb on + strand, within Pf6N2E2_782 at 895.358 kb on + strand, within Pf6N2E2_782 at 895.359 kb on - strand, within Pf6N2E2_782 at 895.359 kb on - strand, within Pf6N2E2_782 at 895.362 kb on + strand, within Pf6N2E2_782 at 895.362 kb on + strand, within Pf6N2E2_782 at 895.362 kb on + strand, within Pf6N2E2_782 at 895.362 kb on + strand, within Pf6N2E2_782 at 895.363 kb on - strand, within Pf6N2E2_782 at 895.363 kb on - strand, within Pf6N2E2_782 at 895.363 kb on - strand, within Pf6N2E2_782 at 895.363 kb on - strand, within Pf6N2E2_782 at 895.363 kb on - strand, within Pf6N2E2_782 at 895.444 kb on + strand, within Pf6N2E2_782 at 895.445 kb on - strand, within Pf6N2E2_782 at 895.445 kb on - strand, within Pf6N2E2_782 at 895.445 kb on - strand, within Pf6N2E2_782 at 895.451 kb on + strand, within Pf6N2E2_782 at 895.451 kb on + strand, within Pf6N2E2_782 at 895.451 kb on + strand, within Pf6N2E2_782 at 895.452 kb on - strand, within Pf6N2E2_782 at 895.491 kb on + strand, within Pf6N2E2_782 at 895.491 kb on + strand, within Pf6N2E2_782 at 895.547 kb on + strand, within Pf6N2E2_782 at 895.548 kb on - strand, within Pf6N2E2_782 at 895.548 kb on - strand, within Pf6N2E2_782 at 895.548 kb on - strand, within Pf6N2E2_782
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml remove 891,569 + Pf6N2E2_780 0.67 +0.0 891,663 - Pf6N2E2_780 0.72 +0.7 891,811 - Pf6N2E2_780 0.79 +0.5 891,842 + Pf6N2E2_780 0.81 -0.7 891,843 - Pf6N2E2_780 0.81 -0.1 891,855 - Pf6N2E2_780 0.82 +0.5 891,883 - Pf6N2E2_780 0.83 -1.2 891,896 + Pf6N2E2_780 0.84 +0.8 892,044 + -0.6 892,052 + -3.8 892,076 + +0.7 892,076 + -0.4 892,076 + +0.2 892,076 + -0.3 892,076 + -0.2 892,076 + -0.3 892,076 + +0.5 892,076 + -0.7 892,076 + +0.7 892,076 + -0.3 892,076 + -2.6 892,076 + -0.6 892,077 - +0.9 892,077 - -0.4 892,077 - -0.5 892,077 - -1.5 892,077 - -0.8 892,124 + +1.1 892,124 + +0.4 892,124 + -1.3 892,125 - +0.3 892,130 + -0.5 892,130 + -0.8 892,130 + +0.0 892,130 + -0.1 892,131 - -0.3 892,131 - -0.9 892,131 - +0.7 892,131 - -2.1 892,131 - -0.3 892,137 + -0.4 892,137 + +0.2 892,137 + +0.3 892,137 + +0.1 892,137 + +0.9 892,137 + +0.4 892,138 - +2.0 892,138 - -0.9 892,153 + +0.3 892,153 + +0.3 892,191 + -0.8 892,191 + -0.1 892,192 - +0.6 892,192 - -1.3 892,192 - +0.2 892,232 - +1.7 892,280 + +1.2 892,331 + +0.0 892,331 + -1.3 892,331 + -0.1 892,331 + +0.9 892,332 - +1.3 892,332 - -0.3 892,335 + -2.3 892,335 + +0.3 892,335 + -1.3 892,336 - -0.5 892,349 + +0.4 892,356 + +0.2 892,371 + +0.5 892,374 + -1.1 892,374 + +0.2 892,374 + -0.6 892,375 - -0.6 892,375 - -0.3 892,420 + -1.0 892,451 + +1.4 892,452 - -0.3 892,475 + -0.3 892,482 + -1.1 892,483 - -1.1 892,483 - +0.3 892,483 - -0.3 892,484 + -1.1 892,521 + -0.3 892,551 + -0.3 892,552 - +0.5 892,552 - +0.2 892,603 + -0.4 892,617 + -0.8 892,688 + +0.7 892,689 - +0.4 892,689 - +0.6 892,740 + -0.5 892,743 + +1.1 892,743 + -0.3 892,744 - +1.3 892,744 - -2.3 892,785 + Pf6N2E2_781 0.11 -0.6 892,787 + Pf6N2E2_781 0.11 -0.3 893,019 + Pf6N2E2_781 0.22 -1.3 893,052 - Pf6N2E2_781 0.24 +0.1 893,196 + Pf6N2E2_781 0.30 -2.5 893,197 - Pf6N2E2_781 0.31 +0.1 893,346 + Pf6N2E2_781 0.38 +0.4 893,346 + Pf6N2E2_781 0.38 +0.3 893,347 - Pf6N2E2_781 0.38 +0.1 893,347 - Pf6N2E2_781 0.38 -2.8 893,440 + Pf6N2E2_781 0.42 +0.7 893,440 + Pf6N2E2_781 0.42 -0.5 893,441 - Pf6N2E2_781 0.42 -0.3 893,441 - Pf6N2E2_781 0.42 -0.6 893,442 + Pf6N2E2_781 0.42 +1.4 893,442 + Pf6N2E2_781 0.42 +0.3 893,442 + Pf6N2E2_781 0.42 +0.8 893,443 - Pf6N2E2_781 0.42 -1.1 893,526 + Pf6N2E2_781 0.46 +0.4 893,527 - Pf6N2E2_781 0.46 -1.3 893,553 + Pf6N2E2_781 0.47 -1.3 893,553 + Pf6N2E2_781 0.47 +1.2 893,553 + Pf6N2E2_781 0.47 +0.7 893,553 + Pf6N2E2_781 0.47 +0.1 893,553 + Pf6N2E2_781 0.47 -1.1 893,553 + Pf6N2E2_781 0.47 -0.5 893,554 - Pf6N2E2_781 0.48 -1.3 893,673 + Pf6N2E2_781 0.53 +0.3 893,673 + Pf6N2E2_781 0.53 -0.1 893,673 + Pf6N2E2_781 0.53 -0.2 893,677 + Pf6N2E2_781 0.53 -1.0 893,677 + Pf6N2E2_781 0.53 +1.5 893,677 + Pf6N2E2_781 0.53 -0.6 893,677 + Pf6N2E2_781 0.53 +0.3 893,677 + Pf6N2E2_781 0.53 +0.5 893,677 + Pf6N2E2_781 0.53 +0.7 893,678 - Pf6N2E2_781 0.53 -0.3 893,678 - Pf6N2E2_781 0.53 +1.3 893,678 - Pf6N2E2_781 0.53 -0.0 893,678 - Pf6N2E2_781 0.53 +0.0 893,683 + Pf6N2E2_781 0.54 -0.5 893,683 + Pf6N2E2_781 0.54 +0.1 893,717 - Pf6N2E2_781 0.55 -0.5 893,717 - Pf6N2E2_781 0.55 -0.3 893,878 + Pf6N2E2_781 0.63 +0.4 893,878 + Pf6N2E2_781 0.63 +0.3 893,879 - Pf6N2E2_781 0.63 -0.1 893,920 + Pf6N2E2_781 0.65 -0.2 893,921 - Pf6N2E2_781 0.65 -0.1 893,922 + Pf6N2E2_781 0.65 +0.7 893,922 + Pf6N2E2_781 0.65 -1.9 893,922 + Pf6N2E2_781 0.65 -0.5 893,923 - Pf6N2E2_781 0.65 -0.3 894,013 + Pf6N2E2_781 0.69 -0.4 894,015 + Pf6N2E2_781 0.69 +0.4 894,015 + Pf6N2E2_781 0.69 +1.9 894,070 + Pf6N2E2_781 0.72 -0.5 894,082 + Pf6N2E2_781 0.73 -0.3 894,112 + Pf6N2E2_781 0.74 -0.5 894,112 + Pf6N2E2_781 0.74 -1.1 894,115 + Pf6N2E2_781 0.74 -2.3 894,115 + Pf6N2E2_781 0.74 -0.6 894,116 - Pf6N2E2_781 0.74 -0.6 894,199 + Pf6N2E2_781 0.78 -0.3 894,199 + Pf6N2E2_781 0.78 +0.9 894,243 + Pf6N2E2_781 0.80 +1.2 894,243 + Pf6N2E2_781 0.80 -0.2 894,262 + Pf6N2E2_781 0.81 +0.0 894,262 + Pf6N2E2_781 0.81 +0.6 894,262 + Pf6N2E2_781 0.81 -0.6 894,358 + Pf6N2E2_781 0.86 -0.4 894,358 + Pf6N2E2_781 0.86 -0.5 894,359 - Pf6N2E2_781 0.86 +1.0 894,492 + -0.2 894,492 + +0.5 894,492 + +0.8 894,492 + +0.0 894,492 + -0.3 894,592 + +0.1 894,629 + +0.4 894,646 + -0.2 894,669 + +1.5 894,803 - -0.8 894,803 - +0.2 894,827 + +1.8 894,827 + -1.0 894,827 + -1.5 894,827 + +1.4 894,847 + +1.3 894,847 + +1.1 894,882 + -2.6 894,883 - +1.4 894,947 + -0.4 895,009 + -0.5 895,010 - +0.7 895,010 - -0.8 895,010 - -3.8 895,010 - -0.9 895,043 - Pf6N2E2_782 0.10 -0.5 895,101 - Pf6N2E2_782 0.14 +0.4 895,169 + Pf6N2E2_782 0.18 -0.3 895,170 - Pf6N2E2_782 0.19 -0.8 895,170 - Pf6N2E2_782 0.19 +1.6 895,186 - Pf6N2E2_782 0.20 +0.7 895,186 - Pf6N2E2_782 0.20 -0.6 895,212 - Pf6N2E2_782 0.21 -1.1 895,221 + Pf6N2E2_782 0.22 -0.1 895,221 + Pf6N2E2_782 0.22 +0.3 895,221 + Pf6N2E2_782 0.22 +0.3 895,229 + Pf6N2E2_782 0.22 -0.6 895,229 + Pf6N2E2_782 0.22 +0.2 895,230 - Pf6N2E2_782 0.23 +1.7 895,261 + Pf6N2E2_782 0.25 +0.0 895,262 - Pf6N2E2_782 0.25 -1.9 895,358 + Pf6N2E2_782 0.31 +0.1 895,358 + Pf6N2E2_782 0.31 +0.7 895,359 - Pf6N2E2_782 0.31 +1.0 895,359 - Pf6N2E2_782 0.31 +0.1 895,362 + Pf6N2E2_782 0.31 +0.2 895,362 + Pf6N2E2_782 0.31 +1.3 895,362 + Pf6N2E2_782 0.31 +0.1 895,362 + Pf6N2E2_782 0.31 +1.0 895,363 - Pf6N2E2_782 0.31 -0.7 895,363 - Pf6N2E2_782 0.31 -0.5 895,363 - Pf6N2E2_782 0.31 -0.8 895,363 - Pf6N2E2_782 0.31 +1.0 895,363 - Pf6N2E2_782 0.31 +1.7 895,444 + Pf6N2E2_782 0.37 -0.8 895,445 - Pf6N2E2_782 0.37 +0.5 895,445 - Pf6N2E2_782 0.37 +3.5 895,445 - Pf6N2E2_782 0.37 +0.7 895,451 + Pf6N2E2_782 0.37 +0.2 895,451 + Pf6N2E2_782 0.37 +0.8 895,451 + Pf6N2E2_782 0.37 +1.2 895,452 - Pf6N2E2_782 0.37 +0.4 895,491 + Pf6N2E2_782 0.40 +0.3 895,491 + Pf6N2E2_782 0.40 -0.6 895,547 + Pf6N2E2_782 0.44 -0.4 895,548 - Pf6N2E2_782 0.44 -1.6 895,548 - Pf6N2E2_782 0.44 -1.8 895,548 - Pf6N2E2_782 0.44 +0.6
Or see this region's nucleotide sequence