Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_772

Experiment: Doxycycline hyclate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_770 and Pf6N2E2_771 overlap by 4 nucleotidesPf6N2E2_771 and Pf6N2E2_772 are separated by 263 nucleotidesPf6N2E2_772 and Pf6N2E2_773 are separated by 273 nucleotides Pf6N2E2_770 - Ribosylnicotinamide kinase (EC 2.7.1.22), at 880,977 to 881,501 _770 Pf6N2E2_771 - Ribosyl nicotinamide transporter, PnuC-like, at 881,498 to 882,061 _771 Pf6N2E2_772 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 882,325 to 883,959 _772 Pf6N2E2_773 - Undecaprenyl-diphosphatase (EC 3.6.1.27), at 884,233 to 885,063 _773 Position (kb) 882 883 884Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 881.400 kb on + strand, within Pf6N2E2_770at 881.401 kb on - strand, within Pf6N2E2_770at 881.404 kb on + strand, within Pf6N2E2_770at 881.404 kb on + strand, within Pf6N2E2_770at 881.405 kb on - strand, within Pf6N2E2_770at 881.405 kb on - strand, within Pf6N2E2_770at 881.405 kb on - strand, within Pf6N2E2_770at 881.405 kb on - strand, within Pf6N2E2_770at 881.568 kb on + strand, within Pf6N2E2_771at 881.568 kb on + strand, within Pf6N2E2_771at 881.568 kb on + strand, within Pf6N2E2_771at 881.569 kb on - strand, within Pf6N2E2_771at 881.598 kb on + strand, within Pf6N2E2_771at 881.599 kb on - strand, within Pf6N2E2_771at 881.877 kb on + strand, within Pf6N2E2_771at 881.878 kb on - strand, within Pf6N2E2_771at 881.878 kb on - strand, within Pf6N2E2_771at 881.896 kb on - strand, within Pf6N2E2_771at 881.896 kb on - strand, within Pf6N2E2_771at 881.896 kb on - strand, within Pf6N2E2_771at 881.922 kb on + strand, within Pf6N2E2_771at 881.922 kb on + strand, within Pf6N2E2_771at 881.922 kb on + strand, within Pf6N2E2_771at 881.952 kb on + strand, within Pf6N2E2_771at 881.952 kb on + strand, within Pf6N2E2_771at 881.953 kb on - strand, within Pf6N2E2_771at 881.953 kb on - strand, within Pf6N2E2_771at 882.079 kb on + strandat 882.080 kb on - strandat 882.080 kb on - strandat 882.080 kb on - strandat 882.098 kb on + strandat 882.126 kb on - strandat 882.166 kb on + strandat 882.167 kb on - strandat 882.167 kb on - strandat 882.283 kb on + strandat 882.283 kb on + strandat 882.693 kb on + strand, within Pf6N2E2_772at 882.693 kb on + strand, within Pf6N2E2_772at 882.694 kb on - strand, within Pf6N2E2_772at 882.821 kb on - strand, within Pf6N2E2_772at 882.821 kb on - strand, within Pf6N2E2_772at 883.022 kb on + strand, within Pf6N2E2_772at 883.022 kb on + strand, within Pf6N2E2_772at 883.023 kb on - strand, within Pf6N2E2_772at 883.427 kb on + strand, within Pf6N2E2_772at 883.428 kb on - strand, within Pf6N2E2_772at 883.475 kb on + strand, within Pf6N2E2_772at 883.475 kb on + strand, within Pf6N2E2_772at 883.475 kb on + strand, within Pf6N2E2_772at 883.475 kb on + strand, within Pf6N2E2_772at 883.476 kb on - strand, within Pf6N2E2_772at 883.523 kb on + strand, within Pf6N2E2_772at 883.524 kb on - strand, within Pf6N2E2_772at 883.524 kb on - strand, within Pf6N2E2_772at 883.524 kb on - strand, within Pf6N2E2_772at 883.683 kb on - strand, within Pf6N2E2_772at 883.697 kb on + strand, within Pf6N2E2_772at 883.698 kb on - strand, within Pf6N2E2_772at 883.698 kb on - strand, within Pf6N2E2_772at 883.712 kb on - strand, within Pf6N2E2_772at 883.778 kb on + strand, within Pf6N2E2_772at 883.779 kb on - strand, within Pf6N2E2_772at 883.781 kb on + strand, within Pf6N2E2_772at 883.781 kb on + strand, within Pf6N2E2_772at 883.864 kb on - strandat 883.864 kb on - strandat 883.864 kb on - strandat 883.953 kb on + strandat 883.953 kb on + strandat 883.954 kb on - strandat 883.954 kb on - strandat 883.959 kb on + strandat 883.960 kb on - strandat 883.960 kb on - strandat 883.981 kb on - strandat 883.981 kb on - strandat 883.991 kb on + strandat 883.991 kb on + strandat 884.009 kb on + strandat 884.076 kb on + strandat 884.273 kb on + strandat 884.325 kb on + strand, within Pf6N2E2_773at 884.325 kb on + strand, within Pf6N2E2_773at 884.837 kb on - strand, within Pf6N2E2_773at 884.846 kb on - strand, within Pf6N2E2_773at 884.846 kb on - strand, within Pf6N2E2_773at 884.851 kb on + strand, within Pf6N2E2_773

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml
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881,400 + Pf6N2E2_770 0.81 +0.3
881,401 - Pf6N2E2_770 0.81 +0.2
881,404 + Pf6N2E2_770 0.81 +0.7
881,404 + Pf6N2E2_770 0.81 +0.3
881,405 - Pf6N2E2_770 0.82 -0.7
881,405 - Pf6N2E2_770 0.82 +0.5
881,405 - Pf6N2E2_770 0.82 +0.9
881,405 - Pf6N2E2_770 0.82 +0.9
881,568 + Pf6N2E2_771 0.12 +0.1
881,568 + Pf6N2E2_771 0.12 -0.6
881,568 + Pf6N2E2_771 0.12 -0.6
881,569 - Pf6N2E2_771 0.13 -1.6
881,598 + Pf6N2E2_771 0.18 -0.3
881,599 - Pf6N2E2_771 0.18 +0.7
881,877 + Pf6N2E2_771 0.67 -0.3
881,878 - Pf6N2E2_771 0.67 -2.0
881,878 - Pf6N2E2_771 0.67 -0.8
881,896 - Pf6N2E2_771 0.71 +2.0
881,896 - Pf6N2E2_771 0.71 -0.3
881,896 - Pf6N2E2_771 0.71 +0.1
881,922 + Pf6N2E2_771 0.75 +0.9
881,922 + Pf6N2E2_771 0.75 -0.1
881,922 + Pf6N2E2_771 0.75 +1.0
881,952 + Pf6N2E2_771 0.80 +1.3
881,952 + Pf6N2E2_771 0.80 -0.1
881,953 - Pf6N2E2_771 0.81 +1.0
881,953 - Pf6N2E2_771 0.81 +0.6
882,079 + +0.9
882,080 - -0.1
882,080 - +1.5
882,080 - -0.4
882,098 + +2.0
882,126 - -0.0
882,166 + +0.6
882,167 - +1.6
882,167 - +0.2
882,283 + +1.6
882,283 + +0.1
882,693 + Pf6N2E2_772 0.23 +1.0
882,693 + Pf6N2E2_772 0.23 +0.4
882,694 - Pf6N2E2_772 0.23 +0.3
882,821 - Pf6N2E2_772 0.30 -2.3
882,821 - Pf6N2E2_772 0.30 -0.3
883,022 + Pf6N2E2_772 0.43 +1.1
883,022 + Pf6N2E2_772 0.43 -1.3
883,023 - Pf6N2E2_772 0.43 +0.4
883,427 + Pf6N2E2_772 0.67 +0.1
883,428 - Pf6N2E2_772 0.67 -2.9
883,475 + Pf6N2E2_772 0.70 +0.9
883,475 + Pf6N2E2_772 0.70 +0.5
883,475 + Pf6N2E2_772 0.70 +1.6
883,475 + Pf6N2E2_772 0.70 -0.3
883,476 - Pf6N2E2_772 0.70 +0.1
883,523 + Pf6N2E2_772 0.73 -0.1
883,524 - Pf6N2E2_772 0.73 -0.4
883,524 - Pf6N2E2_772 0.73 +0.5
883,524 - Pf6N2E2_772 0.73 +1.7
883,683 - Pf6N2E2_772 0.83 +0.5
883,697 + Pf6N2E2_772 0.84 -1.3
883,698 - Pf6N2E2_772 0.84 -0.6
883,698 - Pf6N2E2_772 0.84 +1.3
883,712 - Pf6N2E2_772 0.85 +2.0
883,778 + Pf6N2E2_772 0.89 +0.2
883,779 - Pf6N2E2_772 0.89 +2.4
883,781 + Pf6N2E2_772 0.89 +0.4
883,781 + Pf6N2E2_772 0.89 -3.9
883,864 - +1.9
883,864 - +2.1
883,864 - +2.6
883,953 + -2.4
883,953 + -2.0
883,954 - +2.6
883,954 - +3.2
883,959 + -2.8
883,960 - +3.6
883,960 - +0.9
883,981 - +3.2
883,981 - +2.3
883,991 + -2.5
883,991 + -2.8
884,009 + -1.2
884,076 + -1.1
884,273 + +4.6
884,325 + Pf6N2E2_773 0.11 +4.0
884,325 + Pf6N2E2_773 0.11 +4.8
884,837 - Pf6N2E2_773 0.73 +5.4
884,846 - Pf6N2E2_773 0.74 +4.3
884,846 - Pf6N2E2_773 0.74 +4.4
884,851 + Pf6N2E2_773 0.74 +4.7

Or see this region's nucleotide sequence