Experiment: Doxycycline hyclate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_599 and Pf6N2E2_600 overlap by 1 nucleotides Pf6N2E2_600 and Pf6N2E2_601 overlap by 4 nucleotides Pf6N2E2_601 and Pf6N2E2_602 are separated by 45 nucleotides Pf6N2E2_602 and Pf6N2E2_603 overlap by 4 nucleotides
Pf6N2E2_599 - NAD kinase (EC 2.7.1.23), at 674,239 to 675,129
_599
Pf6N2E2_600 - Diadenosine tetraphosphatase and related serine/threonine protein phosphatases, at 675,129 to 676,100
_600
Pf6N2E2_601 - GlpG protein (membrane protein of glp regulon), at 676,097 to 676,969
_601
Pf6N2E2_602 - FIG00954117: hypothetical protein, at 677,015 to 677,275
_602
Pf6N2E2_603 - FIG00953934: hypothetical protein, at 677,272 to 678,102
_603
Position (kb) 676
677 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 675.423 kb on + strand, within Pf6N2E2_600 at 675.423 kb on + strand, within Pf6N2E2_600 at 675.424 kb on - strand at 675.526 kb on - strand, within Pf6N2E2_600 at 675.933 kb on + strand, within Pf6N2E2_600 at 675.988 kb on - strand, within Pf6N2E2_600 at 676.256 kb on + strand, within Pf6N2E2_601 at 676.257 kb on - strand, within Pf6N2E2_601 at 676.257 kb on - strand, within Pf6N2E2_601 at 676.257 kb on - strand, within Pf6N2E2_601 at 676.475 kb on + strand, within Pf6N2E2_601 at 676.475 kb on + strand, within Pf6N2E2_601 at 676.476 kb on - strand, within Pf6N2E2_601 at 676.476 kb on - strand, within Pf6N2E2_601 at 676.760 kb on + strand, within Pf6N2E2_601 at 676.787 kb on + strand, within Pf6N2E2_601 at 676.954 kb on + strand at 677.060 kb on + strand, within Pf6N2E2_602 at 677.199 kb on - strand, within Pf6N2E2_602 at 677.199 kb on - strand, within Pf6N2E2_602 at 677.338 kb on + strand at 677.339 kb on - strand at 677.408 kb on - strand, within Pf6N2E2_603 at 677.606 kb on - strand, within Pf6N2E2_603 at 677.606 kb on - strand, within Pf6N2E2_603 at 677.606 kb on - strand, within Pf6N2E2_603 at 677.606 kb on - strand, within Pf6N2E2_603
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml remove 675,423 + Pf6N2E2_600 0.30 +1.0 675,423 + Pf6N2E2_600 0.30 +1.0 675,424 - -0.3 675,526 - Pf6N2E2_600 0.41 -1.7 675,933 + Pf6N2E2_600 0.83 +0.4 675,988 - Pf6N2E2_600 0.88 +1.2 676,256 + Pf6N2E2_601 0.18 -0.3 676,257 - Pf6N2E2_601 0.18 -3.1 676,257 - Pf6N2E2_601 0.18 +0.6 676,257 - Pf6N2E2_601 0.18 -1.5 676,475 + Pf6N2E2_601 0.43 -0.6 676,475 + Pf6N2E2_601 0.43 -2.0 676,476 - Pf6N2E2_601 0.43 -0.5 676,476 - Pf6N2E2_601 0.43 -1.5 676,760 + Pf6N2E2_601 0.76 -1.0 676,787 + Pf6N2E2_601 0.79 -0.2 676,954 + -0.5 677,060 + Pf6N2E2_602 0.17 +1.6 677,199 - Pf6N2E2_602 0.70 -0.9 677,199 - Pf6N2E2_602 0.70 -0.3 677,338 + +0.7 677,339 - +1.2 677,408 - Pf6N2E2_603 0.16 +0.8 677,606 - Pf6N2E2_603 0.40 +0.1 677,606 - Pf6N2E2_603 0.40 +0.2 677,606 - Pf6N2E2_603 0.40 +0.1 677,606 - Pf6N2E2_603 0.40 +1.1
Or see this region's nucleotide sequence