Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5961

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
6,778,820	+		Pf6N2E2_5960	0.37	-0.9
6,778,820	+		Pf6N2E2_5960	0.37	-0.2
6,778,820	+		Pf6N2E2_5960	0.37	+0.9
6,778,820	+		Pf6N2E2_5960	0.37	+0.5
6,778,821	-		Pf6N2E2_5960	0.37	+0.5
6,778,827	-		Pf6N2E2_5960	0.38	-0.4
6,778,827	-		Pf6N2E2_5960	0.38	-0.8
6,778,827	-		Pf6N2E2_5960	0.38	+0.5
6,779,036	+		Pf6N2E2_5960	0.65	-0.3
6,779,036	+		Pf6N2E2_5960	0.65	+0.4
6,779,037	-		Pf6N2E2_5960	0.65	+0.3
6,779,039	+		Pf6N2E2_5960	0.65	+0.6
6,779,039	+		Pf6N2E2_5960	0.65	+0.5
6,779,039	+		Pf6N2E2_5960	0.65	+1.0
6,779,040	-		Pf6N2E2_5960	0.65	-0.7
6,779,040	-		Pf6N2E2_5960	0.65	+0.3
6,779,144	+		Pf6N2E2_5960	0.78	+1.5
6,779,144	+		Pf6N2E2_5960	0.78	+0.6
6,779,145	-		Pf6N2E2_5960	0.78	+1.0
6,779,189	+		Pf6N2E2_5960	0.84	+0.7
6,779,189	+		Pf6N2E2_5960	0.84	-0.7
6,779,189	+		Pf6N2E2_5960	0.84	+0.9
6,779,189	+		Pf6N2E2_5960	0.84	-0.4
6,779,189	+		Pf6N2E2_5960	0.84	+0.1
6,779,189	+		Pf6N2E2_5960	0.84	-0.1
6,779,189	+		Pf6N2E2_5960	0.84	+0.4
6,779,189	+		Pf6N2E2_5960	0.84	+0.1
6,779,189	+		Pf6N2E2_5960	0.84	+0.4
6,779,190	-		Pf6N2E2_5960	0.84	+1.3
6,779,190	-		Pf6N2E2_5960	0.84	-0.1
6,779,190	-		Pf6N2E2_5960	0.84	-0.7
6,779,190	-		Pf6N2E2_5960	0.84	-0.0
6,779,190	-		Pf6N2E2_5960	0.84	-0.4
6,779,190	-		Pf6N2E2_5960	0.84	-0.0
6,779,193	+		Pf6N2E2_5960	0.84	+3.7
6,779,193	+		Pf6N2E2_5960	0.84	-1.0
6,779,193	+		Pf6N2E2_5960	0.84	-1.7
6,779,194	-		Pf6N2E2_5960	0.84	-1.6
6,779,237	+		Pf6N2E2_5960	0.90	+2.2
6,779,237	+		Pf6N2E2_5960	0.90	-0.3
6,779,238	-				-0.7
6,779,378	-				-0.0
6,779,378	-				-0.3
6,779,378	-				+0.7
6,779,403	+				+0.5
6,779,404	-				+1.8
6,779,453	+				-1.2
6,779,453	+				-0.7
6,779,454	-				+0.9
6,779,454	-				-0.5
6,779,454	-				+0.7
6,779,454	-				+0.9
6,779,454	-				+0.4
6,779,463	+				+0.8
6,779,463	+				-0.3
6,779,463	+				-0.8
6,779,463	+				+0.3
6,779,463	+				+0.9
6,779,464	-				+0.1
6,779,659	+				+0.3
6,779,851	+		Pf6N2E2_5961	0.23	-0.1
6,779,851	+		Pf6N2E2_5961	0.23	-1.4
6,779,851	+		Pf6N2E2_5961	0.23	-0.5
6,779,851	+		Pf6N2E2_5961	0.23	-1.7
6,779,851	+		Pf6N2E2_5961	0.23	-2.9
6,779,852	-		Pf6N2E2_5961	0.24	-0.7
6,779,853	+		Pf6N2E2_5961	0.24	-2.1
6,779,853	+		Pf6N2E2_5961	0.24	-1.7
6,779,881	+		Pf6N2E2_5961	0.28	-2.5
6,779,881	+		Pf6N2E2_5961	0.28	-1.1
6,779,881	+		Pf6N2E2_5961	0.28	-1.5
6,779,881	+		Pf6N2E2_5961	0.28	-1.2
6,779,881	+		Pf6N2E2_5961	0.28	-0.9
6,779,882	-		Pf6N2E2_5961	0.28	-3.4
6,779,882	-		Pf6N2E2_5961	0.28	-2.9
6,779,882	-		Pf6N2E2_5961	0.28	-1.0
6,779,902	+		Pf6N2E2_5961	0.31	-2.3
6,779,902	+		Pf6N2E2_5961	0.31	-1.3
6,779,974	+		Pf6N2E2_5961	0.43	-1.2
6,779,974	+		Pf6N2E2_5961	0.43	-2.5
6,780,166	+		Pf6N2E2_5961	0.73	-0.8
6,780,175	+		Pf6N2E2_5961	0.74	-0.6
6,780,176	-		Pf6N2E2_5961	0.74	+0.9
6,780,217	+		Pf6N2E2_5961	0.81	-0.5
6,780,217	+		Pf6N2E2_5961	0.81	-1.5
6,780,218	-		Pf6N2E2_5961	0.81	+0.6
6,780,218	-		Pf6N2E2_5961	0.81	-0.4
6,780,370	+				+0.5
6,780,370	+				-0.3
6,780,370	+				-2.0
6,780,388	+				-0.3
6,780,388	+				+1.2
6,780,388	+				+0.3
6,780,389	-				+0.4
6,780,389	-				+2.2
6,780,389	-				+1.1
6,780,389	-				+1.2
6,780,408	+				+0.7
6,780,411	+				+1.1
6,780,411	+				+0.0
6,780,411	+				+0.2
6,780,412	-				+0.6
6,780,413	+				-1.1
6,780,413	+				-0.2
6,780,414	-				+0.2
6,780,414	-				+0.0
6,780,414	-				+0.3
6,780,414	-				+0.9
6,780,448	-				-0.8
6,780,526	-				-3.5
6,780,559	+				+2.0
6,780,559	+				+0.5
6,780,559	+				-0.6
6,780,559	+				-1.0
6,780,560	-				-0.2
6,780,560	-				-1.3
6,780,560	-				+0.2
6,780,567	+				+0.0
6,780,567	+				+0.2
6,780,567	+				+2.2
6,780,567	+				+0.4
6,780,567	+				+0.3
6,780,568	-				+0.1
6,780,568	-				-0.5
6,780,568	-				-0.6
6,780,568	-				+0.8
6,780,568	-				+0.3
6,780,571	+				-0.4
6,780,571	+				-1.3
6,780,571	+				-1.1
6,780,571	+				+0.3
6,780,571	+				+1.8
6,780,571	+				-1.9
6,780,571	+				-0.2
6,780,572	-				+1.3
6,780,649	+		Pf6N2E2_5962	0.16	-1.1
6,780,649	+		Pf6N2E2_5962	0.16	-1.1
6,780,649	+		Pf6N2E2_5962	0.16	-0.8
6,781,012	+		Pf6N2E2_5962	0.54	+0.2
6,781,012	+		Pf6N2E2_5962	0.54	-0.4
6,781,012	+		Pf6N2E2_5962	0.54	-0.5
6,781,013	-		Pf6N2E2_5962	0.54	-0.7
6,781,013	-		Pf6N2E2_5962	0.54	+0.1
6,781,013	-		Pf6N2E2_5962	0.54	-0.2
6,781,030	+		Pf6N2E2_5962	0.55	-1.1
6,781,031	-		Pf6N2E2_5962	0.56	-0.4
6,781,144	+		Pf6N2E2_5962	0.67	-0.7
6,781,144	+		Pf6N2E2_5962	0.67	-0.4
6,781,150	+		Pf6N2E2_5962	0.68	+0.3
6,781,150	+		Pf6N2E2_5962	0.68	-0.3
6,781,151	-		Pf6N2E2_5962	0.68	-0.7
6,781,151	-		Pf6N2E2_5962	0.68	+0.3
6,781,151	-		Pf6N2E2_5962	0.68	+0.1
6,781,179	+		Pf6N2E2_5962	0.71	+0.1
6,781,255	-		Pf6N2E2_5962	0.79	-2.5
6,781,255	-		Pf6N2E2_5962	0.79	-0.4