Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5845

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
6,659,927	+		Pf6N2E2_5844	0.22	-1.0
6,660,019	-		Pf6N2E2_5844	0.32	+1.1
6,660,019	-		Pf6N2E2_5844	0.32	-0.3
6,660,170	-		Pf6N2E2_5844	0.48	-0.4
6,660,294	+		Pf6N2E2_5844	0.62	-2.1
6,660,295	-		Pf6N2E2_5844	0.62	+0.4
6,660,295	-		Pf6N2E2_5844	0.62	-1.2
6,660,295	-		Pf6N2E2_5844	0.62	-0.5
6,660,405	+		Pf6N2E2_5844	0.74	-0.3
6,660,405	+		Pf6N2E2_5844	0.74	-1.1
6,660,405	+		Pf6N2E2_5844	0.74	-1.8
6,660,405	+		Pf6N2E2_5844	0.74	-2.9
6,660,642	+				-2.0
6,660,642	+				-0.1
6,660,709	+				-0.8
6,660,709	+				-1.5
6,660,709	+				-0.6
6,660,709	+				-1.6
6,660,709	+				-1.0
6,660,709	+				-0.8
6,660,709	+				-0.8
6,660,709	+				+0.6
6,660,710	-				-0.3
6,660,780	+				-2.1
6,660,780	+				-1.0
6,660,814	-				-1.1
6,660,819	+				-3.1
6,660,819	+				-3.4
6,660,820	-				-2.7
6,660,820	-				-3.5
6,660,834	+				-1.7
6,660,949	-		Pf6N2E2_5845	0.22	-1.3
6,660,949	-		Pf6N2E2_5845	0.22	-2.1
6,660,973	-		Pf6N2E2_5845	0.26	-3.0
6,661,029	-		Pf6N2E2_5845	0.33	-0.5
6,661,029	-		Pf6N2E2_5845	0.33	-0.8
6,661,035	+		Pf6N2E2_5845	0.34	-1.7
6,661,036	-		Pf6N2E2_5845	0.34	-0.9
6,661,056	+		Pf6N2E2_5845	0.37	-4.0
6,661,056	+		Pf6N2E2_5845	0.37	-0.1
6,661,344	+		Pf6N2E2_5845	0.75	-2.8
6,661,377	+		Pf6N2E2_5845	0.79	-3.2
6,661,377	+		Pf6N2E2_5845	0.79	-1.8
6,661,377	+		Pf6N2E2_5845	0.79	-1.1
6,661,378	-		Pf6N2E2_5845	0.79	-2.4
6,661,378	-		Pf6N2E2_5845	0.79	-3.5
6,661,557	+				-0.8
6,661,557	+				-2.3
6,661,557	+				-0.7
6,661,557	+				-2.4
6,661,557	+				+0.4
6,661,558	-				-0.4
6,661,558	-				-3.6
6,661,558	-				-1.2
6,661,558	-				-0.3
6,661,558	-				-0.9
6,661,558	-				-3.0
6,661,558	-				-4.1
6,661,607	+				-2.3
6,661,607	+				-3.1
6,661,607	+				-2.7
6,661,607	+				-1.1
6,661,607	+				-2.2
6,661,608	-				-2.4
6,661,608	-				-1.1
6,661,608	-				-4.1
6,661,608	-				-3.1
6,661,608	-				-1.9
6,661,747	+		Pf6N2E2_5846	0.14	-2.7
6,661,748	-		Pf6N2E2_5846	0.14	-2.6
6,661,762	+		Pf6N2E2_5846	0.16	-1.7
6,661,846	+		Pf6N2E2_5846	0.22	-3.1
6,661,847	-		Pf6N2E2_5846	0.22	-2.7
6,661,847	-		Pf6N2E2_5846	0.22	-3.2
6,661,847	-		Pf6N2E2_5846	0.22	-1.9
6,661,847	-		Pf6N2E2_5846	0.22	-1.7
6,662,057	-		Pf6N2E2_5846	0.38	-3.2
6,662,083	+		Pf6N2E2_5846	0.40	-1.9
6,662,101	+		Pf6N2E2_5846	0.42	-1.7
6,662,102	-		Pf6N2E2_5846	0.42	-2.1
6,662,122	-		Pf6N2E2_5846	0.43	-3.1
6,662,131	+		Pf6N2E2_5846	0.44	-2.4
6,662,203	+		Pf6N2E2_5846	0.49	-1.9
6,662,203	+		Pf6N2E2_5846	0.49	-3.2
6,662,203	+		Pf6N2E2_5846	0.49	+1.5
6,662,204	-		Pf6N2E2_5846	0.50	-3.1
6,662,204	-		Pf6N2E2_5846	0.50	-1.1
6,662,204	-		Pf6N2E2_5846	0.50	-2.1
6,662,320	+		Pf6N2E2_5846	0.59	-2.4
6,662,321	-		Pf6N2E2_5846	0.59	-3.2
6,662,323	+		Pf6N2E2_5846	0.59	-3.4
6,662,324	-		Pf6N2E2_5846	0.59	-2.1
6,662,324	-		Pf6N2E2_5846	0.59	-2.5
6,662,324	-		Pf6N2E2_5846	0.59	-3.9
6,662,377	+		Pf6N2E2_5846	0.63	-2.3
6,662,377	+		Pf6N2E2_5846	0.63	-2.2
6,662,378	-		Pf6N2E2_5846	0.63	-4.0
6,662,491	+		Pf6N2E2_5846	0.72	-1.5
6,662,491	+		Pf6N2E2_5846	0.72	-0.1
6,662,491	+		Pf6N2E2_5846	0.72	-2.6
6,662,491	+		Pf6N2E2_5846	0.72	-3.6
6,662,492	-		Pf6N2E2_5846	0.72	-1.3
6,662,492	-		Pf6N2E2_5846	0.72	-2.1
6,662,492	-		Pf6N2E2_5846	0.72	-1.9
6,662,492	-		Pf6N2E2_5846	0.72	-1.7
6,662,492	-		Pf6N2E2_5846	0.72	-1.3
6,662,492	-		Pf6N2E2_5846	0.72	+0.7
6,662,495	-		Pf6N2E2_5846	0.72	-2.9
6,662,495	-		Pf6N2E2_5846	0.72	-4.3
6,662,495	-		Pf6N2E2_5846	0.72	-1.9
6,662,495	-		Pf6N2E2_5846	0.72	-2.9
6,662,509	+		Pf6N2E2_5846	0.73	-3.2
6,662,510	-		Pf6N2E2_5846	0.73	-2.0
6,662,510	-		Pf6N2E2_5846	0.73	-0.9
6,662,522	+		Pf6N2E2_5846	0.74	-0.7
6,662,522	+		Pf6N2E2_5846	0.74	-2.0
6,662,522	+		Pf6N2E2_5846	0.74	-2.4
6,662,522	+		Pf6N2E2_5846	0.74	-0.8
6,662,522	+		Pf6N2E2_5846	0.74	-1.2
6,662,522	+		Pf6N2E2_5846	0.74	-3.0
6,662,522	+		Pf6N2E2_5846	0.74	-2.7
6,662,522	+		Pf6N2E2_5846	0.74	-3.5
6,662,523	-		Pf6N2E2_5846	0.74	-2.7