Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5663

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
6,474,075	+		Pf6N2E2_5661	0.87	-0.5
6,474,075	+		Pf6N2E2_5661	0.87	-1.7
6,474,076	-		Pf6N2E2_5661	0.88	+0.3
6,474,136	+				+0.2
6,474,157	+				-1.2
6,474,157	+				-0.4
6,474,157	+				-1.0
6,474,157	+				+0.7
6,474,158	-				-0.1
6,474,158	-				-1.4
6,474,170	+				-2.2
6,474,182	+				-0.5
6,474,182	+				-0.9
6,474,182	+				-0.0
6,474,182	+				-0.8
6,474,182	+				-0.4
6,474,183	-				-0.4
6,474,183	-				+0.1
6,474,183	-				-2.3
6,474,183	-				-3.5
6,474,183	-				-0.8
6,474,200	+				-0.0
6,474,201	-				+0.5
6,474,329	+		Pf6N2E2_5662	0.24	-0.2
6,474,335	+		Pf6N2E2_5662	0.25	-0.0
6,474,335	+		Pf6N2E2_5662	0.25	-1.1
6,474,335	+		Pf6N2E2_5662	0.25	+0.5
6,474,335	+		Pf6N2E2_5662	0.25	-2.0
6,474,335	+		Pf6N2E2_5662	0.25	-1.0
6,474,335	+		Pf6N2E2_5662	0.25	+1.4
6,474,335	+		Pf6N2E2_5662	0.25	-0.4
6,474,335	+		Pf6N2E2_5662	0.25	+0.1
6,474,335	+		Pf6N2E2_5662	0.25	-1.8
6,474,336	-		Pf6N2E2_5662	0.25	-0.9
6,474,336	-		Pf6N2E2_5662	0.25	-2.2
6,474,336	-		Pf6N2E2_5662	0.25	-1.6
6,474,336	-		Pf6N2E2_5662	0.25	+0.7
6,474,380	+		Pf6N2E2_5662	0.32	-1.8
6,474,381	-		Pf6N2E2_5662	0.32	+0.2
6,474,383	+		Pf6N2E2_5662	0.32	-0.4
6,474,383	+		Pf6N2E2_5662	0.32	+0.4
6,474,488	+		Pf6N2E2_5662	0.47	+0.7
6,474,489	-		Pf6N2E2_5662	0.47	+2.0
6,474,489	-		Pf6N2E2_5662	0.47	+0.1
6,474,629	+		Pf6N2E2_5662	0.67	-0.8
6,474,629	+		Pf6N2E2_5662	0.67	-2.3
6,474,630	-		Pf6N2E2_5662	0.68	-1.0
6,474,630	-		Pf6N2E2_5662	0.68	-1.6
6,474,635	-		Pf6N2E2_5662	0.68	-0.0
6,474,728	+		Pf6N2E2_5662	0.82	-3.7
6,474,729	-		Pf6N2E2_5662	0.82	-1.4
6,474,731	+		Pf6N2E2_5662	0.82	+0.0
6,474,731	+		Pf6N2E2_5662	0.82	+1.2
6,474,732	-		Pf6N2E2_5662	0.82	-1.0
6,474,732	-		Pf6N2E2_5662	0.82	-0.3
6,474,732	-		Pf6N2E2_5662	0.82	-0.5
6,474,732	-		Pf6N2E2_5662	0.82	-1.9
6,474,732	-		Pf6N2E2_5662	0.82	+1.2
6,474,749	+		Pf6N2E2_5662	0.85	-0.2
6,474,749	+		Pf6N2E2_5662	0.85	+1.2
6,474,750	-		Pf6N2E2_5662	0.85	-0.7
6,474,770	+		Pf6N2E2_5662	0.88	+1.5
6,474,771	-		Pf6N2E2_5662	0.88	+1.0
6,474,787	+				-0.0
6,474,834	-				+0.1
6,474,916	+				-0.8
6,474,916	+				-1.4
6,474,916	+				+1.0
6,474,916	+				-2.3
6,474,916	+				+0.6
6,474,916	+				-0.4
6,474,917	-				+0.3
6,474,917	-				-1.0
6,474,943	-				+0.1
6,474,943	-				-0.8
6,474,949	+				+0.8
6,475,041	+		Pf6N2E2_5663	0.17	-2.0
6,475,042	-		Pf6N2E2_5663	0.17	-0.5
6,475,042	-		Pf6N2E2_5663	0.17	-1.2
6,475,309	+		Pf6N2E2_5663	0.52	-0.2
6,475,309	+		Pf6N2E2_5663	0.52	-1.4
6,475,310	-		Pf6N2E2_5663	0.52	-2.0
6,475,467	-		Pf6N2E2_5663	0.72	-1.2
6,475,467	-		Pf6N2E2_5663	0.72	-0.0
6,475,587	+		Pf6N2E2_5663	0.88	-1.0
6,475,676	-				-1.6
6,475,676	-				-2.0
6,475,734	+				+1.2
6,475,735	-				-1.0
6,475,735	-				-0.3
6,475,762	-				+2.3
6,475,762	-				-2.2
6,475,808	-				+0.6
6,475,833	-				-1.5
6,475,902	+		Pf6N2E2_5664	0.11	-1.0
6,475,903	-		Pf6N2E2_5664	0.11	-0.6
6,475,903	-		Pf6N2E2_5664	0.11	-1.5
6,476,210	+		Pf6N2E2_5664	0.43	+0.2
6,476,497	+		Pf6N2E2_5664	0.72	+0.6
6,476,498	-		Pf6N2E2_5664	0.72	+0.6
6,476,532	+		Pf6N2E2_5664	0.76	-0.3
6,476,533	-		Pf6N2E2_5664	0.76	-0.4
6,476,533	-		Pf6N2E2_5664	0.76	+0.6
6,476,533	-		Pf6N2E2_5664	0.76	-0.8
6,476,556	+		Pf6N2E2_5664	0.78	-2.3
6,476,556	+		Pf6N2E2_5664	0.78	-2.0
6,476,556	+		Pf6N2E2_5664	0.78	-1.6
6,476,557	-		Pf6N2E2_5664	0.78	-0.8
6,476,557	-		Pf6N2E2_5664	0.78	-1.2
6,476,559	+		Pf6N2E2_5664	0.78	+1.0
6,476,560	-		Pf6N2E2_5664	0.78	-2.3
6,476,560	-		Pf6N2E2_5664	0.78	-0.4