Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5615

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
6,430,234	+		Pf6N2E2_5614	0.68	+1.2
6,430,235	-		Pf6N2E2_5614	0.68	+0.2
6,430,296	+		Pf6N2E2_5614	0.70	+0.0
6,430,297	-		Pf6N2E2_5614	0.70	-1.6
6,430,297	-		Pf6N2E2_5614	0.70	-0.2
6,430,297	-		Pf6N2E2_5614	0.70	+0.7
6,430,347	+		Pf6N2E2_5614	0.72	+0.7
6,430,347	+		Pf6N2E2_5614	0.72	-1.0
6,430,347	+		Pf6N2E2_5614	0.72	-1.3
6,430,347	+		Pf6N2E2_5614	0.72	-1.2
6,430,348	-		Pf6N2E2_5614	0.72	-0.3
6,430,348	-		Pf6N2E2_5614	0.72	+0.2
6,430,351	+		Pf6N2E2_5614	0.72	-0.7
6,430,351	+		Pf6N2E2_5614	0.72	-0.2
6,430,351	+		Pf6N2E2_5614	0.72	-3.8
6,430,351	+		Pf6N2E2_5614	0.72	-0.4
6,430,351	+		Pf6N2E2_5614	0.72	-0.4
6,430,351	+		Pf6N2E2_5614	0.72	-0.2
6,430,352	-		Pf6N2E2_5614	0.72	+0.8
6,430,352	-		Pf6N2E2_5614	0.72	-0.3
6,430,352	-		Pf6N2E2_5614	0.72	-0.6
6,430,352	-		Pf6N2E2_5614	0.72	+0.0
6,430,352	-		Pf6N2E2_5614	0.72	+0.5
6,430,352	-		Pf6N2E2_5614	0.72	-2.0
6,430,352	-		Pf6N2E2_5614	0.72	-1.6
6,430,352	-		Pf6N2E2_5614	0.72	+0.1
6,430,352	-		Pf6N2E2_5614	0.72	+0.4
6,430,390	+		Pf6N2E2_5614	0.73	+0.4
6,430,390	+		Pf6N2E2_5614	0.73	+1.0
6,430,390	+		Pf6N2E2_5614	0.73	+0.3
6,430,391	-		Pf6N2E2_5614	0.74	+0.3
6,430,525	+		Pf6N2E2_5614	0.78	-0.2
6,430,525	+		Pf6N2E2_5614	0.78	-0.3
6,430,525	+		Pf6N2E2_5614	0.78	+0.6
6,430,526	-		Pf6N2E2_5614	0.78	+1.2
6,430,526	-		Pf6N2E2_5614	0.78	-0.6
6,430,526	-		Pf6N2E2_5614	0.78	+0.4
6,430,585	-		Pf6N2E2_5614	0.80	-1.0
6,430,726	+		Pf6N2E2_5614	0.85	+1.0
6,430,726	+		Pf6N2E2_5614	0.85	+0.4
6,430,726	+		Pf6N2E2_5614	0.85	-1.2
6,430,726	+		Pf6N2E2_5614	0.85	+0.0
6,430,774	+		Pf6N2E2_5614	0.86	-0.1
6,430,775	-		Pf6N2E2_5614	0.86	+1.3
6,430,775	-		Pf6N2E2_5614	0.86	-0.7
6,430,775	-		Pf6N2E2_5614	0.86	+0.6
6,430,775	-		Pf6N2E2_5614	0.86	+0.9
6,430,775	-		Pf6N2E2_5614	0.86	-0.9
6,430,913	-				-2.7
6,430,957	+				-2.0
6,430,957	+				-0.2
6,430,958	-				-1.4
6,430,958	-				-2.0
6,430,958	-				+0.8
6,430,958	-				-0.5
6,430,958	-				+0.0
6,430,958	-				+0.1
6,431,008	+				+0.4
6,431,008	+				-0.8
6,431,008	+				-1.6
6,431,008	+				-0.1
6,431,008	+				-1.6
6,431,009	-				+1.4
6,431,009	-				+1.5
6,431,084	-				-0.2
6,431,459	+		Pf6N2E2_5615	0.22	-0.4
6,431,459	+		Pf6N2E2_5615	0.22	-0.2
6,431,459	+		Pf6N2E2_5615	0.22	+0.6
6,431,459	+		Pf6N2E2_5615	0.22	+1.1
6,431,459	+		Pf6N2E2_5615	0.22	-0.6
6,431,459	+		Pf6N2E2_5615	0.22	+1.3
6,431,459	+		Pf6N2E2_5615	0.22	+0.5
6,431,460	-		Pf6N2E2_5615	0.22	-1.0
6,431,460	-		Pf6N2E2_5615	0.22	-0.6
6,431,460	-		Pf6N2E2_5615	0.22	-0.2
6,431,484	-		Pf6N2E2_5615	0.24	-0.1
6,431,737	+		Pf6N2E2_5615	0.46	-0.8
6,431,737	+		Pf6N2E2_5615	0.46	+0.7
6,431,737	+		Pf6N2E2_5615	0.46	-2.0
6,431,737	+		Pf6N2E2_5615	0.46	-0.4
6,431,738	-		Pf6N2E2_5615	0.46	-1.0
6,431,741	+		Pf6N2E2_5615	0.47	+0.7
6,431,741	+		Pf6N2E2_5615	0.47	-1.6
6,431,741	+		Pf6N2E2_5615	0.47	+0.6
6,431,741	+		Pf6N2E2_5615	0.47	-1.4
6,431,741	+		Pf6N2E2_5615	0.47	-0.7
6,431,741	+		Pf6N2E2_5615	0.47	-0.1
6,431,741	+		Pf6N2E2_5615	0.47	+0.2
6,431,741	+		Pf6N2E2_5615	0.47	+1.2
6,431,741	+		Pf6N2E2_5615	0.47	-0.8
6,431,742	-		Pf6N2E2_5615	0.47	-0.5
6,431,742	-		Pf6N2E2_5615	0.47	-0.8
6,431,742	-		Pf6N2E2_5615	0.47	+0.9
6,431,742	-		Pf6N2E2_5615	0.47	+0.0
6,431,753	+		Pf6N2E2_5615	0.48	-1.3
6,431,753	+		Pf6N2E2_5615	0.48	-1.4
6,431,753	+		Pf6N2E2_5615	0.48	-0.9
6,431,753	+		Pf6N2E2_5615	0.48	-0.8
6,431,753	+		Pf6N2E2_5615	0.48	+0.0
6,431,754	-		Pf6N2E2_5615	0.48	+0.1
6,431,754	-		Pf6N2E2_5615	0.48	-0.4
6,431,804	+		Pf6N2E2_5615	0.52	-0.9
6,431,805	-		Pf6N2E2_5615	0.52	-0.1
6,432,269	+				-1.2
6,432,269	+				+0.4
6,432,269	+				-1.2
6,432,269	+				+0.3
6,432,270	-				-0.2
6,432,270	-				+0.0
6,432,270	-				+2.0
6,432,388	+				-0.4
6,432,389	-				-0.3
6,432,389	-				+0.5
6,432,394	+				+0.8
6,432,394	+				-1.6
6,432,394	+				-0.2
6,432,394	+				+0.3
6,432,394	+				-0.9
6,432,395	-				+1.0
6,432,408	-				+0.2
6,432,425	+				-0.6
6,432,592	+				+0.2
6,432,593	-				+0.7
6,432,593	-				+0.2
6,432,593	-				+1.9
6,432,784	+		Pf6N2E2_5616	0.25	+0.7
6,432,785	-		Pf6N2E2_5616	0.25	+0.4
6,432,785	-		Pf6N2E2_5616	0.25	+0.8
6,433,235	-		Pf6N2E2_5616	0.66	-0.6
6,433,235	-		Pf6N2E2_5616	0.66	-0.8
6,433,253	+		Pf6N2E2_5616	0.68	-1.2
6,433,254	-		Pf6N2E2_5616	0.68	-0.7
6,433,273	+		Pf6N2E2_5616	0.69	-0.9
6,433,274	-		Pf6N2E2_5616	0.70	-0.3
6,433,339	+		Pf6N2E2_5616	0.76	+0.7
6,433,339	+		Pf6N2E2_5616	0.76	-0.9
6,433,340	-		Pf6N2E2_5616	0.76	-0.2