Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5546

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
6,359,543	-		Pf6N2E2_5544	0.79	-2.8
6,359,543	-		Pf6N2E2_5544	0.79	-0.8
6,359,543	-		Pf6N2E2_5544	0.79	+0.6
6,359,543	-		Pf6N2E2_5544	0.79	-0.8
6,359,575	+		Pf6N2E2_5544	0.83	-0.6
6,359,591	+		Pf6N2E2_5544	0.85	-3.4
6,359,621	+		Pf6N2E2_5544	0.89	-0.7
6,359,621	+		Pf6N2E2_5544	0.89	-0.7
6,359,621	+		Pf6N2E2_5544	0.89	-0.9
6,359,621	+		Pf6N2E2_5544	0.89	-0.3
6,359,622	-		Pf6N2E2_5544	0.89	-0.6
6,359,622	-		Pf6N2E2_5544	0.89	+0.5
6,359,622	-		Pf6N2E2_5544	0.89	-1.2
6,359,704	+				-0.0
6,359,704	+				+1.1
6,359,704	+				-0.0
6,359,704	+				-0.4
6,359,705	-				+0.1
6,359,705	-				+0.9
6,359,777	-				+2.4
6,359,850	+				+0.9
6,359,857	+				-0.9
6,359,858	-				+1.4
6,359,873	-				+3.1
6,359,949	+		Pf6N2E2_5545	0.12	+2.5
6,359,950	-		Pf6N2E2_5545	0.12	+1.5
6,359,950	-		Pf6N2E2_5545	0.12	+2.4
6,359,987	+		Pf6N2E2_5545	0.18	+2.1
6,360,063	-		Pf6N2E2_5545	0.29	+2.2
6,360,074	+		Pf6N2E2_5545	0.31	+2.6
6,360,075	-		Pf6N2E2_5545	0.31	+2.0
6,360,188	-		Pf6N2E2_5545	0.49	+2.4
6,360,362	+		Pf6N2E2_5545	0.75	+2.8
6,360,487	+				+2.9
6,360,487	+				+1.5
6,360,487	+				+3.2
6,360,488	-				+2.5
6,360,488	-				+2.1
6,360,491	+				+2.6
6,360,491	+				+1.5
6,360,491	+				+2.8
6,360,492	-				+1.3
6,360,521	+				+2.9
6,360,521	+				+1.3
6,360,522	-				+1.9
6,360,522	-				+1.5
6,360,631	-		Pf6N2E2_5546	0.16	+1.9
6,360,631	-		Pf6N2E2_5546	0.16	+2.3
6,360,631	-		Pf6N2E2_5546	0.16	+1.4
6,360,649	-		Pf6N2E2_5546	0.18	+2.4
6,360,819	+		Pf6N2E2_5546	0.43	+1.6
6,360,819	+		Pf6N2E2_5546	0.43	+0.8
6,360,819	+		Pf6N2E2_5546	0.43	+1.6
6,360,819	+		Pf6N2E2_5546	0.43	+2.8
6,360,819	+		Pf6N2E2_5546	0.43	+2.5
6,360,819	+		Pf6N2E2_5546	0.43	+2.8
6,360,819	+		Pf6N2E2_5546	0.43	+2.1
6,360,819	+		Pf6N2E2_5546	0.43	+1.9
6,360,819	+		Pf6N2E2_5546	0.43	+2.1
6,360,819	+		Pf6N2E2_5546	0.43	+1.9
6,360,819	+		Pf6N2E2_5546	0.43	+1.8
6,360,820	-		Pf6N2E2_5546	0.43	+2.2
6,360,820	-		Pf6N2E2_5546	0.43	+2.5
6,360,820	-		Pf6N2E2_5546	0.43	+1.7
6,360,820	-		Pf6N2E2_5546	0.43	+2.7
6,360,820	-		Pf6N2E2_5546	0.43	+1.9
6,360,820	-		Pf6N2E2_5546	0.43	+1.8
6,360,833	+		Pf6N2E2_5546	0.45	+2.3
6,360,833	+		Pf6N2E2_5546	0.45	+1.8
6,360,841	+		Pf6N2E2_5546	0.46	+1.5
6,360,842	-		Pf6N2E2_5546	0.46	+1.9
6,361,424	+				+1.1
6,361,424	+				-0.5
6,361,424	+				+0.6
6,361,425	-				-1.5
6,361,668	-		Pf6N2E2_5547	0.12	-0.1
6,361,746	+		Pf6N2E2_5547	0.17	-0.3
6,361,746	+		Pf6N2E2_5547	0.17	+1.6
6,361,752	+		Pf6N2E2_5547	0.17	+0.8
6,361,752	+		Pf6N2E2_5547	0.17	-2.3
6,361,752	+		Pf6N2E2_5547	0.17	+0.6
6,361,752	+		Pf6N2E2_5547	0.17	+1.5
6,361,752	+		Pf6N2E2_5547	0.17	-0.2
6,361,753	-		Pf6N2E2_5547	0.17	-0.4
6,361,753	-		Pf6N2E2_5547	0.17	+0.0
6,361,753	-		Pf6N2E2_5547	0.17	+0.9
6,361,753	-		Pf6N2E2_5547	0.17	-0.2
6,361,753	-		Pf6N2E2_5547	0.17	-0.5
6,361,753	-		Pf6N2E2_5547	0.17	-0.8
6,361,769	-		Pf6N2E2_5547	0.19	+0.3
6,361,769	-		Pf6N2E2_5547	0.19	+0.5
6,361,851	+		Pf6N2E2_5547	0.24	-0.1
6,361,851	+		Pf6N2E2_5547	0.24	+0.0
6,361,851	+		Pf6N2E2_5547	0.24	+0.9
6,361,851	+		Pf6N2E2_5547	0.24	-1.0
6,361,852	-		Pf6N2E2_5547	0.24	+0.2
6,361,852	-		Pf6N2E2_5547	0.24	+0.3
6,361,918	+		Pf6N2E2_5547	0.29	+0.0
6,361,919	-		Pf6N2E2_5547	0.29	+0.4
6,361,950	+		Pf6N2E2_5547	0.31	-0.6
6,361,951	-		Pf6N2E2_5547	0.31	-0.7
6,361,951	-		Pf6N2E2_5547	0.31	+2.9
6,361,951	-		Pf6N2E2_5547	0.31	+0.6
6,362,008	+		Pf6N2E2_5547	0.35	-1.1
6,362,008	+		Pf6N2E2_5547	0.35	-2.0
6,362,009	-		Pf6N2E2_5547	0.35	-0.7
6,362,009	-		Pf6N2E2_5547	0.35	-0.1
6,362,009	-		Pf6N2E2_5547	0.35	-2.0
6,362,009	-		Pf6N2E2_5547	0.35	-0.7
6,362,009	-		Pf6N2E2_5547	0.35	+1.0
6,362,034	+		Pf6N2E2_5547	0.37	-0.6
6,362,034	+		Pf6N2E2_5547	0.37	+0.8
6,362,035	-		Pf6N2E2_5547	0.37	-3.3
6,362,035	-		Pf6N2E2_5547	0.37	-0.5
6,362,035	-		Pf6N2E2_5547	0.37	-2.4
6,362,089	+		Pf6N2E2_5547	0.41	+0.3
6,362,089	+		Pf6N2E2_5547	0.41	-1.0
6,362,090	-		Pf6N2E2_5547	0.41	+0.8
6,362,090	-		Pf6N2E2_5547	0.41	+2.0
6,362,122	+		Pf6N2E2_5547	0.43	+0.1
6,362,122	+		Pf6N2E2_5547	0.43	-0.3
6,362,122	+		Pf6N2E2_5547	0.43	-0.6
6,362,122	+		Pf6N2E2_5547	0.43	-1.1
6,362,122	+		Pf6N2E2_5547	0.43	-1.7
6,362,122	+		Pf6N2E2_5547	0.43	+1.6
6,362,123	-		Pf6N2E2_5547	0.43	+0.6
6,362,123	-		Pf6N2E2_5547	0.43	-0.2
6,362,123	-		Pf6N2E2_5547	0.43	-0.8
6,362,123	-		Pf6N2E2_5547	0.43	+1.3
6,362,123	-		Pf6N2E2_5547	0.43	+0.0
6,362,123	-		Pf6N2E2_5547	0.43	-0.6
6,362,123	-		Pf6N2E2_5547	0.43	-0.2
6,362,123	-		Pf6N2E2_5547	0.43	+0.0
6,362,130	+		Pf6N2E2_5547	0.44	+0.1
6,362,130	+		Pf6N2E2_5547	0.44	+0.3
6,362,130	+		Pf6N2E2_5547	0.44	+1.6
6,362,130	+		Pf6N2E2_5547	0.44	+0.4
6,362,131	-		Pf6N2E2_5547	0.44	+0.0
6,362,131	-		Pf6N2E2_5547	0.44	-1.7
6,362,131	-		Pf6N2E2_5547	0.44	-0.4
6,362,175	+		Pf6N2E2_5547	0.47	-0.5