Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5402

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
6,206,531	+		Pf6N2E2_5401	0.24	+0.7
6,206,531	+		Pf6N2E2_5401	0.24	+1.7
6,206,609	+		Pf6N2E2_5401	0.36	+0.6
6,206,609	+		Pf6N2E2_5401	0.36	+1.6
6,206,609	+		Pf6N2E2_5401	0.36	+1.1
6,206,609	+		Pf6N2E2_5401	0.36	+1.0
6,206,609	+		Pf6N2E2_5401	0.36	+0.7
6,206,609	+		Pf6N2E2_5401	0.36	+0.6
6,206,609	+		Pf6N2E2_5401	0.36	+2.2
6,206,610	-		Pf6N2E2_5401	0.36	+0.4
6,206,610	-		Pf6N2E2_5401	0.36	-0.6
6,206,610	-		Pf6N2E2_5401	0.36	-1.0
6,206,610	-		Pf6N2E2_5401	0.36	-1.6
6,206,613	+		Pf6N2E2_5401	0.36	+1.1
6,206,613	+		Pf6N2E2_5401	0.36	+0.8
6,206,613	+		Pf6N2E2_5401	0.36	+1.1
6,206,613	+		Pf6N2E2_5401	0.36	+1.5
6,206,614	-		Pf6N2E2_5401	0.37	-0.6
6,206,614	-		Pf6N2E2_5401	0.37	+1.1
6,206,614	-		Pf6N2E2_5401	0.37	-0.5
6,206,669	+		Pf6N2E2_5401	0.45	+0.4
6,206,669	+		Pf6N2E2_5401	0.45	+0.2
6,206,670	-		Pf6N2E2_5401	0.45	-1.2
6,206,670	-		Pf6N2E2_5401	0.45	-0.5
6,206,722	+		Pf6N2E2_5401	0.53	+1.0
6,206,828	+		Pf6N2E2_5401	0.69	+1.3
6,206,980	-				-0.5
6,207,076	+				+0.8
6,207,076	+				+0.5
6,207,076	+				+2.0
6,207,077	-				+0.4
6,207,101	+				+0.8
6,207,105	+				+1.0
6,207,105	+				+1.4
6,207,106	-				-3.5
6,207,106	-				-2.1
6,207,145	+				+1.6
6,207,192	-				-1.8
6,207,209	+				+2.6
6,207,210	-				-3.7
6,207,227	+				+1.6
6,207,227	+				+2.7
6,207,227	+				+1.9
6,207,227	+				+1.4
6,207,227	+				+1.6
6,207,228	-				+1.1
6,207,290	+				-0.3
6,207,315	+				+2.3
6,207,316	-				-3.2
6,207,376	+				+1.8
6,207,379	+				+1.8
6,207,380	-				-1.9
6,207,380	-				-3.5
6,207,380	-				-0.7
6,207,380	-				-3.3
6,207,388	-				-1.8
6,207,388	-				-2.0
6,207,511	+				-2.9
6,207,512	-				-1.5
6,207,512	-				-0.9
6,207,512	-				-2.7
6,207,722	-		Pf6N2E2_5402	0.21	-0.9
6,207,879	+		Pf6N2E2_5402	0.36	-2.5
6,207,879	+		Pf6N2E2_5402	0.36	-4.1
6,207,880	-		Pf6N2E2_5402	0.36	-0.4
6,207,880	-		Pf6N2E2_5402	0.36	-2.5
6,207,882	+		Pf6N2E2_5402	0.37	+0.9
6,207,882	+		Pf6N2E2_5402	0.37	-0.2
6,207,882	+		Pf6N2E2_5402	0.37	-0.3
6,207,883	-		Pf6N2E2_5402	0.37	-2.5
6,207,883	-		Pf6N2E2_5402	0.37	-1.8
6,207,883	-		Pf6N2E2_5402	0.37	-1.5
6,207,999	+		Pf6N2E2_5402	0.48	-1.2
6,208,000	-		Pf6N2E2_5402	0.48	-0.3
6,208,000	-		Pf6N2E2_5402	0.48	-3.6
6,208,024	-		Pf6N2E2_5402	0.50	-0.9
6,208,152	+		Pf6N2E2_5402	0.63	-0.2
6,208,153	-		Pf6N2E2_5402	0.63	+0.6
6,208,153	-		Pf6N2E2_5402	0.63	-1.6
6,208,153	-		Pf6N2E2_5402	0.63	-1.5
6,208,337	+		Pf6N2E2_5402	0.81	-1.9
6,208,337	+		Pf6N2E2_5402	0.81	-1.0
6,208,338	-		Pf6N2E2_5402	0.81	-1.3
6,208,338	-		Pf6N2E2_5402	0.81	-0.8
6,208,359	+		Pf6N2E2_5402	0.83	-0.9
6,208,360	-		Pf6N2E2_5402	0.83	-1.0
6,208,422	+		Pf6N2E2_5402	0.89	-0.4
6,208,422	+		Pf6N2E2_5402	0.89	-1.5
6,208,542	+				-2.2
6,208,542	+				+0.1
6,208,542	+				+0.5
6,208,543	-				-1.2
6,208,625	-				+0.7
6,208,625	-				+0.2
6,208,625	-				-1.8
6,208,625	-				+1.4
6,208,625	-				-0.2
6,208,625	-				-0.4
6,208,668	+				-0.7
6,208,669	-				+0.1
6,208,669	-				+0.6
6,208,669	-				-1.8
6,208,821	-		Pf6N2E2_5403	0.15	+0.1
6,208,838	+		Pf6N2E2_5403	0.16	+0.8
6,208,838	+		Pf6N2E2_5403	0.16	-0.1
6,208,838	+		Pf6N2E2_5403	0.16	-0.9
6,208,838	+		Pf6N2E2_5403	0.16	+1.3
6,208,839	-		Pf6N2E2_5403	0.16	-1.2
6,208,839	-		Pf6N2E2_5403	0.16	+1.4
6,208,839	-		Pf6N2E2_5403	0.16	+0.4
6,208,839	-		Pf6N2E2_5403	0.16	+0.0
6,208,839	-		Pf6N2E2_5403	0.16	+0.4
6,208,979	+		Pf6N2E2_5403	0.29	+1.4
6,208,979	+		Pf6N2E2_5403	0.29	+0.8
6,208,979	+		Pf6N2E2_5403	0.29	+0.5
6,208,979	+		Pf6N2E2_5403	0.29	-0.7
6,208,980	-		Pf6N2E2_5403	0.29	+0.1
6,208,980	-		Pf6N2E2_5403	0.29	+0.1
6,208,980	-		Pf6N2E2_5403	0.29	+1.1
6,208,980	-		Pf6N2E2_5403	0.29	+0.4
6,208,996	+		Pf6N2E2_5403	0.30	-1.5
6,209,000	-		Pf6N2E2_5403	0.31	-1.0
6,209,041	-		Pf6N2E2_5403	0.34	+2.1
6,209,075	-		Pf6N2E2_5403	0.37	+0.4
6,209,166	+		Pf6N2E2_5403	0.45	+0.5
6,209,167	-		Pf6N2E2_5403	0.45	+0.5
6,209,167	-		Pf6N2E2_5403	0.45	-2.2
6,209,167	-		Pf6N2E2_5403	0.45	+0.1
6,209,167	-		Pf6N2E2_5403	0.45	-0.8
6,209,167	-		Pf6N2E2_5403	0.45	-0.6
6,209,167	-		Pf6N2E2_5403	0.45	+0.3
6,209,245	+		Pf6N2E2_5403	0.52	-0.8
6,209,246	-		Pf6N2E2_5403	0.52	+0.8
6,209,246	-		Pf6N2E2_5403	0.52	-0.9
6,209,246	-		Pf6N2E2_5403	0.52	+0.1
6,209,411	+		Pf6N2E2_5403	0.67	-0.0
6,209,412	-		Pf6N2E2_5403	0.67	+0.8
6,209,412	-		Pf6N2E2_5403	0.67	-2.5