Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5401

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
6,205,667	+		Pf6N2E2_5400	0.59	+0.7
6,205,667	+		Pf6N2E2_5400	0.59	-0.5
6,205,705	+		Pf6N2E2_5400	0.61	+0.2
6,205,754	+		Pf6N2E2_5400	0.65	+0.0
6,205,754	+		Pf6N2E2_5400	0.65	+0.7
6,205,754	+		Pf6N2E2_5400	0.65	+0.7
6,205,755	-		Pf6N2E2_5400	0.65	+0.4
6,205,755	-		Pf6N2E2_5400	0.65	+0.9
6,205,755	-		Pf6N2E2_5400	0.65	+0.4
6,205,755	-		Pf6N2E2_5400	0.65	+0.6
6,205,755	-		Pf6N2E2_5400	0.65	+0.2
6,205,755	-		Pf6N2E2_5400	0.65	-0.6
6,205,871	+		Pf6N2E2_5400	0.73	+1.5
6,205,990	+		Pf6N2E2_5400	0.81	+1.0
6,205,990	+		Pf6N2E2_5400	0.81	+1.7
6,205,991	-		Pf6N2E2_5400	0.81	+0.9
6,205,991	-		Pf6N2E2_5400	0.81	-0.5
6,206,297	+				+0.4
6,206,298	-				-1.1
6,206,312	-				-1.3
6,206,312	-				-0.8
6,206,425	+				+2.1
6,206,448	-		Pf6N2E2_5401	0.11	-0.3
6,206,482	+		Pf6N2E2_5401	0.16	+0.2
6,206,482	+		Pf6N2E2_5401	0.16	+1.0
6,206,482	+		Pf6N2E2_5401	0.16	-0.5
6,206,482	+		Pf6N2E2_5401	0.16	+1.3
6,206,483	-		Pf6N2E2_5401	0.17	-0.3
6,206,483	-		Pf6N2E2_5401	0.17	-2.5
6,206,483	-		Pf6N2E2_5401	0.17	-3.0
6,206,483	-		Pf6N2E2_5401	0.17	-1.2
6,206,486	+		Pf6N2E2_5401	0.17	+0.8
6,206,487	-		Pf6N2E2_5401	0.17	-0.3
6,206,487	-		Pf6N2E2_5401	0.17	-0.6
6,206,487	-		Pf6N2E2_5401	0.17	+0.6
6,206,487	-		Pf6N2E2_5401	0.17	-1.9
6,206,531	+		Pf6N2E2_5401	0.24	+0.7
6,206,531	+		Pf6N2E2_5401	0.24	+1.7
6,206,609	+		Pf6N2E2_5401	0.36	+0.6
6,206,609	+		Pf6N2E2_5401	0.36	+1.6
6,206,609	+		Pf6N2E2_5401	0.36	+1.1
6,206,609	+		Pf6N2E2_5401	0.36	+1.0
6,206,609	+		Pf6N2E2_5401	0.36	+0.7
6,206,609	+		Pf6N2E2_5401	0.36	+0.6
6,206,609	+		Pf6N2E2_5401	0.36	+2.2
6,206,610	-		Pf6N2E2_5401	0.36	+0.4
6,206,610	-		Pf6N2E2_5401	0.36	-0.6
6,206,610	-		Pf6N2E2_5401	0.36	-1.0
6,206,610	-		Pf6N2E2_5401	0.36	-1.6
6,206,613	+		Pf6N2E2_5401	0.36	+1.1
6,206,613	+		Pf6N2E2_5401	0.36	+0.8
6,206,613	+		Pf6N2E2_5401	0.36	+1.1
6,206,613	+		Pf6N2E2_5401	0.36	+1.5
6,206,614	-		Pf6N2E2_5401	0.37	-0.6
6,206,614	-		Pf6N2E2_5401	0.37	+1.1
6,206,614	-		Pf6N2E2_5401	0.37	-0.5
6,206,669	+		Pf6N2E2_5401	0.45	+0.4
6,206,669	+		Pf6N2E2_5401	0.45	+0.2
6,206,670	-		Pf6N2E2_5401	0.45	-1.2
6,206,670	-		Pf6N2E2_5401	0.45	-0.5
6,206,722	+		Pf6N2E2_5401	0.53	+1.0
6,206,828	+		Pf6N2E2_5401	0.69	+1.3
6,206,980	-				-0.5
6,207,076	+				+0.8
6,207,076	+				+0.5
6,207,076	+				+2.0
6,207,077	-				+0.4
6,207,101	+				+0.8
6,207,105	+				+1.0
6,207,105	+				+1.4
6,207,106	-				-3.5
6,207,106	-				-2.1
6,207,145	+				+1.6
6,207,192	-				-1.8
6,207,209	+				+2.6
6,207,210	-				-3.7
6,207,227	+				+1.6
6,207,227	+				+2.7
6,207,227	+				+1.9
6,207,227	+				+1.4
6,207,227	+				+1.6
6,207,228	-				+1.1
6,207,290	+				-0.3
6,207,315	+				+2.3
6,207,316	-				-3.2
6,207,376	+				+1.8
6,207,379	+				+1.8
6,207,380	-				-1.9
6,207,380	-				-3.5
6,207,380	-				-0.7
6,207,380	-				-3.3
6,207,388	-				-1.8
6,207,388	-				-2.0
6,207,511	+				-2.9
6,207,512	-				-1.5
6,207,512	-				-0.9
6,207,512	-				-2.7
6,207,722	-		Pf6N2E2_5402	0.21	-0.9
6,207,879	+		Pf6N2E2_5402	0.36	-2.5
6,207,879	+		Pf6N2E2_5402	0.36	-4.1
6,207,880	-		Pf6N2E2_5402	0.36	-0.4
6,207,880	-		Pf6N2E2_5402	0.36	-2.5
6,207,882	+		Pf6N2E2_5402	0.37	+0.9
6,207,882	+		Pf6N2E2_5402	0.37	-0.2
6,207,882	+		Pf6N2E2_5402	0.37	-0.3
6,207,883	-		Pf6N2E2_5402	0.37	-2.5
6,207,883	-		Pf6N2E2_5402	0.37	-1.8
6,207,883	-		Pf6N2E2_5402	0.37	-1.5
6,207,999	+		Pf6N2E2_5402	0.48	-1.2
6,208,000	-		Pf6N2E2_5402	0.48	-0.3
6,208,000	-		Pf6N2E2_5402	0.48	-3.6
6,208,024	-		Pf6N2E2_5402	0.50	-0.9