Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5033

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
5,807,700	+				+0.9
5,807,722	+				+0.2
5,807,722	+				+0.7
5,807,723	-				+0.7
5,807,723	-				+0.8
5,807,736	+				+1.0
5,807,736	+				-0.8
5,807,736	+				+1.3
5,807,736	+				+0.4
5,807,736	+				+1.5
5,807,736	+				+0.7
5,807,737	-				+1.3
5,807,737	-				+1.5
5,807,737	-				+1.4
5,807,737	-				+1.8
5,807,737	-				+0.6
5,807,737	-				+0.2
5,807,905	+				+1.0
5,807,905	+				+0.1
5,807,905	+				+0.7
5,807,905	+				+0.6
5,807,905	+				+1.4
5,807,906	-				-0.1
5,807,906	-				+1.2
5,807,906	-				+0.6
5,808,037	+				+0.9
5,808,037	+				+1.1
5,808,037	+				+0.6
5,808,037	+				+1.7
5,808,038	-				+0.6
5,808,038	-				+1.8
5,808,038	-				+0.2
5,808,038	-				+2.3
5,808,038	-				+1.8
5,808,038	-				+1.4
5,808,038	-				+1.6
5,808,041	+				+1.0
5,808,041	+				+1.8
5,808,041	+				-0.0
5,808,042	-				+0.2
5,808,042	-				+1.4
5,808,042	-				+0.3
5,808,042	-				+1.7
5,808,042	-				+0.9
5,808,042	-				+0.7
5,808,042	-				+0.8
5,808,042	-				+0.7
5,808,042	-				+0.9
5,808,213	-				+1.5
5,808,287	+				+0.4
5,808,407	+				-0.2
5,808,407	+				-0.8
5,808,408	-				+1.3
5,808,451	+				+0.4
5,808,451	+				-0.0
5,808,452	-				+1.0
5,808,452	-				-0.2
5,808,452	-				+1.1
5,808,632	+				+0.6
5,808,632	+				+0.7
5,808,632	+				-0.4
5,808,632	+				-0.2
5,808,633	-				+1.2
5,808,633	-				+1.1
5,808,633	-				+1.3
5,808,633	-				+0.7
5,808,723	+				+0.4
5,808,724	-				-0.7
5,808,910	-		Pf6N2E2_5033	0.13	+1.1
5,809,062	+		Pf6N2E2_5033	0.22	+0.6
5,809,063	-		Pf6N2E2_5033	0.22	-0.1
5,809,063	-		Pf6N2E2_5033	0.22	+0.2
5,809,124	+		Pf6N2E2_5033	0.26	-0.8
5,809,125	-		Pf6N2E2_5033	0.26	+0.3
5,809,143	+		Pf6N2E2_5033	0.27	+1.1
5,809,143	+		Pf6N2E2_5033	0.27	-0.2
5,809,144	-		Pf6N2E2_5033	0.27	-0.4
5,809,144	-		Pf6N2E2_5033	0.27	-0.1
5,809,161	+		Pf6N2E2_5033	0.28	+0.3
5,809,161	+		Pf6N2E2_5033	0.28	+0.5
5,809,161	+		Pf6N2E2_5033	0.28	+0.9
5,809,161	+		Pf6N2E2_5033	0.28	-0.1
5,809,162	-		Pf6N2E2_5033	0.28	+1.1
5,809,162	-		Pf6N2E2_5033	0.28	-0.1
5,809,170	+		Pf6N2E2_5033	0.29	+0.3
5,809,336	+		Pf6N2E2_5033	0.39	+1.9
5,809,337	-		Pf6N2E2_5033	0.39	-1.6
5,809,337	-		Pf6N2E2_5033	0.39	-0.2
5,809,347	+		Pf6N2E2_5033	0.39	-0.8
5,809,347	+		Pf6N2E2_5033	0.39	+1.0
5,809,347	+		Pf6N2E2_5033	0.39	+0.3
5,809,347	+		Pf6N2E2_5033	0.39	+0.3
5,809,347	+		Pf6N2E2_5033	0.39	+1.6
5,809,347	+		Pf6N2E2_5033	0.39	+0.0
5,809,348	-		Pf6N2E2_5033	0.39	-0.3
5,809,348	-		Pf6N2E2_5033	0.39	-1.1
5,809,348	-		Pf6N2E2_5033	0.39	-0.3
5,809,348	-		Pf6N2E2_5033	0.39	-0.2
5,809,348	-		Pf6N2E2_5033	0.39	+0.5
5,809,348	-		Pf6N2E2_5033	0.39	+0.1
5,809,348	-		Pf6N2E2_5033	0.39	+1.3
5,809,459	-		Pf6N2E2_5033	0.46	+1.1
5,809,471	-		Pf6N2E2_5033	0.47	-0.3
5,809,512	+		Pf6N2E2_5033	0.49	+0.8
5,809,513	-		Pf6N2E2_5033	0.49	-0.3
5,809,518	+		Pf6N2E2_5033	0.50	-1.3
5,809,518	+		Pf6N2E2_5033	0.50	+0.2
5,809,519	-		Pf6N2E2_5033	0.50	-0.7
5,809,551	+		Pf6N2E2_5033	0.52	+0.4
5,809,551	+		Pf6N2E2_5033	0.52	+0.9
5,809,551	+		Pf6N2E2_5033	0.52	-0.0
5,809,552	-		Pf6N2E2_5033	0.52	-0.5
5,809,552	-		Pf6N2E2_5033	0.52	+0.6
5,809,552	-		Pf6N2E2_5033	0.52	-0.4
5,809,554	+		Pf6N2E2_5033	0.52	+1.0
5,809,554	+		Pf6N2E2_5033	0.52	-0.4
5,809,554	+		Pf6N2E2_5033	0.52	+0.8
5,809,555	-		Pf6N2E2_5033	0.52	-0.9
5,809,555	-		Pf6N2E2_5033	0.52	+0.9
5,809,705	+		Pf6N2E2_5033	0.61	+4.3
5,809,952	+		Pf6N2E2_5033	0.76	+0.9
5,809,958	+		Pf6N2E2_5033	0.76	+2.1
5,809,958	+		Pf6N2E2_5033	0.76	+0.7
5,809,958	+		Pf6N2E2_5033	0.76	+1.1
5,809,959	-		Pf6N2E2_5033	0.76	-0.5
5,809,998	+		Pf6N2E2_5033	0.79	+1.0
5,809,998	+		Pf6N2E2_5033	0.79	-0.7
5,809,999	-		Pf6N2E2_5033	0.79	+1.6
5,809,999	-		Pf6N2E2_5033	0.79	+0.2
5,810,031	+		Pf6N2E2_5033	0.81	+1.4
5,810,031	+		Pf6N2E2_5033	0.81	+0.9
5,810,032	-		Pf6N2E2_5033	0.81	+0.1
5,810,059	+		Pf6N2E2_5033	0.82	-0.2
5,810,059	+		Pf6N2E2_5033	0.82	+0.6
5,810,059	+		Pf6N2E2_5033	0.82	+1.0
5,810,060	-		Pf6N2E2_5033	0.83	-0.6
5,810,060	-		Pf6N2E2_5033	0.83	+2.2
5,810,060	-		Pf6N2E2_5033	0.83	+0.8
5,810,060	-		Pf6N2E2_5033	0.83	+0.7
5,810,060	-		Pf6N2E2_5033	0.83	+1.1
5,810,060	-		Pf6N2E2_5033	0.83	-0.3
5,810,060	-		Pf6N2E2_5033	0.83	+0.9
5,810,129	+		Pf6N2E2_5033	0.87	+0.6
5,810,341	+				+0.0
5,810,341	+				+1.2
5,810,341	+				-0.2
5,810,341	+				+2.2
5,810,341	+				-1.4
5,810,342	-				+0.6
5,810,342	-				+0.8
5,810,342	-				+0.2
5,810,342	-				+0.8
5,810,411	+				+0.0
5,810,412	-				-1.1
5,810,447	+				+0.9
5,810,447	+				+0.8
5,810,447	+				-0.2
5,810,448	-				-0.2
5,810,448	-				+0.7
5,810,486	+				+0.4
5,810,487	-				+0.2
5,810,487	-				-0.3
5,810,487	-				-1.7
5,810,487	-				-1.0
5,810,487	-				-2.2
5,810,487	-				-0.1
5,810,487	-				-1.0
5,810,516	+				+1.8
5,810,516	+				-0.7
5,810,638	+		Pf6N2E2_5034	0.10	-0.2
5,810,691	+		Pf6N2E2_5034	0.19	-0.2
5,810,691	+		Pf6N2E2_5034	0.19	-0.5
5,810,691	+		Pf6N2E2_5034	0.19	-0.8
5,810,692	-		Pf6N2E2_5034	0.19	+0.5
5,810,692	-		Pf6N2E2_5034	0.19	-0.7
5,810,692	-		Pf6N2E2_5034	0.19	+0.7
5,810,692	-		Pf6N2E2_5034	0.19	+0.4
5,810,869	+		Pf6N2E2_5034	0.47	-0.0
5,810,953	+		Pf6N2E2_5034	0.61	+0.9
5,810,953	+		Pf6N2E2_5034	0.61	+1.4
5,810,954	-		Pf6N2E2_5034	0.61	-0.1
5,810,971	+		Pf6N2E2_5034	0.63	-1.7
5,810,971	+		Pf6N2E2_5034	0.63	+0.2
5,810,971	+		Pf6N2E2_5034	0.63	-0.2
5,811,031	-		Pf6N2E2_5034	0.73	+0.8
5,811,041	+		Pf6N2E2_5034	0.75	+0.0
5,811,092	-		Pf6N2E2_5034	0.83	-0.9
5,811,238	+				+1.3
5,811,239	-				+0.1
5,811,276	-				+0.2
5,811,281	-				+0.2
5,811,295	+		Pf6N2E2_5035	0.11	+1.5
5,811,296	-		Pf6N2E2_5035	0.11	+0.2
5,811,296	-		Pf6N2E2_5035	0.11	-1.3
5,811,296	-		Pf6N2E2_5035	0.11	+1.1
5,811,296	-		Pf6N2E2_5035	0.11	+0.1
5,811,296	-		Pf6N2E2_5035	0.11	+1.3
5,811,296	-		Pf6N2E2_5035	0.11	+0.6
5,811,296	-		Pf6N2E2_5035	0.11	+0.4
5,811,301	+		Pf6N2E2_5035	0.12	+0.5
5,811,302	-		Pf6N2E2_5035	0.12	+0.7
5,811,340	+		Pf6N2E2_5035	0.20	+1.2
5,811,340	+		Pf6N2E2_5035	0.20	+0.6
5,811,340	+		Pf6N2E2_5035	0.20	-0.8
5,811,340	+		Pf6N2E2_5035	0.20	+1.5
5,811,341	-		Pf6N2E2_5035	0.20	-0.0