Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4607

Experiment: Doxycycline hyclate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4606 and Pf6N2E2_4607 are separated by 24 nucleotidesPf6N2E2_4607 and Pf6N2E2_4608 are separated by 85 nucleotidesPf6N2E2_4608 and Pf6N2E2_4609 overlap by 1 nucleotides Pf6N2E2_4606 - Aspartate carbamoyltransferase (EC 2.1.3.2), at 5,331,787 to 5,332,791 _4606 Pf6N2E2_4607 - Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR, at 5,332,816 to 5,333,322 _4607 Pf6N2E2_4608 - Putative Holliday junction resolvase YggF, at 5,333,408 to 5,333,845 _4608 Pf6N2E2_4609 - UPF0301 protein YqgE, at 5,333,845 to 5,334,414 _4609 Position (kb) 5332 5333 5334Strain fitness (log2 ratio) -2 -1 0 1 2at 5332.806 kb on - strandat 5332.806 kb on - strandat 5332.806 kb on - strandat 5332.806 kb on - strandat 5332.806 kb on - strandat 5332.806 kb on - strandat 5332.806 kb on - strandat 5332.818 kb on - strandat 5333.036 kb on - strand, within Pf6N2E2_4607at 5333.036 kb on - strand, within Pf6N2E2_4607at 5333.036 kb on - strand, within Pf6N2E2_4607at 5333.036 kb on - strand, within Pf6N2E2_4607at 5333.036 kb on - strand, within Pf6N2E2_4607at 5333.136 kb on - strand, within Pf6N2E2_4607at 5333.232 kb on - strand, within Pf6N2E2_4607at 5333.232 kb on - strand, within Pf6N2E2_4607at 5333.232 kb on - strand, within Pf6N2E2_4607at 5333.368 kb on - strandat 5333.374 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml
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5,332,806 - +0.0
5,332,806 - -0.6
5,332,806 - -2.6
5,332,806 - -0.2
5,332,806 - -2.4
5,332,806 - +1.3
5,332,806 - -0.4
5,332,818 - +0.2
5,333,036 - Pf6N2E2_4607 0.43 -0.7
5,333,036 - Pf6N2E2_4607 0.43 -2.4
5,333,036 - Pf6N2E2_4607 0.43 -1.3
5,333,036 - Pf6N2E2_4607 0.43 -0.6
5,333,036 - Pf6N2E2_4607 0.43 -1.6
5,333,136 - Pf6N2E2_4607 0.63 -1.6
5,333,232 - Pf6N2E2_4607 0.82 +1.1
5,333,232 - Pf6N2E2_4607 0.82 -1.1
5,333,232 - Pf6N2E2_4607 0.82 +1.8
5,333,368 - -0.6
5,333,374 - -1.9

Or see this region's nucleotide sequence