Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4218

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
4,909,870	+				+2.1
4,909,977	+				-1.5
4,909,978	-				+0.3
4,909,979	+				+0.9
4,909,979	+				-0.7
4,909,979	+				-0.1
4,909,979	+				+0.1
4,909,980	-				+0.2
4,909,984	+				+0.5
4,909,984	+				-0.4
4,909,984	+				-0.6
4,909,985	-				+0.6
4,909,985	-				+0.2
4,909,985	-				+0.7
4,910,043	-				+0.4
4,910,163	+				-0.1
4,910,164	-				+0.2
4,910,164	-				+0.1
4,910,164	-				-1.3
4,910,189	-		Pf6N2E2_4218	0.10	+0.4
4,910,201	-		Pf6N2E2_4218	0.13	-1.9
4,910,214	+		Pf6N2E2_4218	0.16	-1.9
4,910,214	+		Pf6N2E2_4218	0.16	-0.4
4,910,214	+		Pf6N2E2_4218	0.16	-1.6
4,910,214	+		Pf6N2E2_4218	0.16	+2.1
4,910,275	+		Pf6N2E2_4218	0.30	+0.1
4,910,275	+		Pf6N2E2_4218	0.30	-0.2
4,910,276	-		Pf6N2E2_4218	0.30	+0.6
4,910,276	-		Pf6N2E2_4218	0.30	-0.9
4,910,276	-		Pf6N2E2_4218	0.30	+0.4
4,910,276	-		Pf6N2E2_4218	0.30	-0.4
4,910,313	+		Pf6N2E2_4218	0.39	+0.6
4,910,314	-		Pf6N2E2_4218	0.39	-0.8
4,910,317	+		Pf6N2E2_4218	0.40	-0.8
4,910,317	+		Pf6N2E2_4218	0.40	+1.6
4,910,317	+		Pf6N2E2_4218	0.40	-0.7
4,910,317	+		Pf6N2E2_4218	0.40	+0.0
4,910,317	+		Pf6N2E2_4218	0.40	-0.6
4,910,318	-		Pf6N2E2_4218	0.40	-1.1
4,910,318	-		Pf6N2E2_4218	0.40	-1.1
4,910,318	-		Pf6N2E2_4218	0.40	-1.4
4,910,318	-		Pf6N2E2_4218	0.40	-2.0
4,910,318	-		Pf6N2E2_4218	0.40	-0.6
4,910,318	-		Pf6N2E2_4218	0.40	-0.2
4,910,320	+		Pf6N2E2_4218	0.41	-2.0
4,910,320	+		Pf6N2E2_4218	0.41	-0.6
4,910,320	+		Pf6N2E2_4218	0.41	-0.9
4,910,321	-		Pf6N2E2_4218	0.41	-1.3
4,910,321	-		Pf6N2E2_4218	0.41	+0.3
4,910,321	-		Pf6N2E2_4218	0.41	+0.4
4,910,321	-		Pf6N2E2_4218	0.41	+0.4
4,910,425	+		Pf6N2E2_4218	0.65	-0.9
4,910,426	-		Pf6N2E2_4218	0.65	-0.9
4,910,498	-		Pf6N2E2_4218	0.82	+0.7
4,910,498	-		Pf6N2E2_4218	0.82	-3.0
4,910,574	+				+0.4
4,910,574	+				-0.1
4,910,574	+				-2.4
4,910,575	-				-1.0
4,910,575	-				-0.8
4,910,640	-		Pf6N2E2_4219	0.23	-1.7
4,910,915	+				+0.6
4,910,915	+				+2.2
4,910,915	+				+0.5
4,910,916	-				+0.7
4,910,916	-				+0.5
4,910,916	-				-0.6
4,910,916	-				+1.3
4,911,009	+		Pf6N2E2_4220	0.26	-0.9
4,911,169	+		Pf6N2E2_4220	0.53	+1.3
4,911,169	+		Pf6N2E2_4220	0.53	-0.7
4,911,169	+		Pf6N2E2_4220	0.53	-0.1
4,911,169	+		Pf6N2E2_4220	0.53	+0.9
4,911,170	-		Pf6N2E2_4220	0.54	-0.3
4,911,170	-		Pf6N2E2_4220	0.54	-0.3
4,911,170	-		Pf6N2E2_4220	0.54	+0.3
4,911,170	-		Pf6N2E2_4220	0.54	-0.4
4,911,170	-		Pf6N2E2_4220	0.54	-0.5
4,911,170	-		Pf6N2E2_4220	0.54	+0.0
4,911,170	-		Pf6N2E2_4220	0.54	-1.1
4,911,208	+		Pf6N2E2_4220	0.60	+0.6
4,911,208	+		Pf6N2E2_4220	0.60	+0.6
4,911,208	+		Pf6N2E2_4220	0.60	-0.7
4,911,209	-		Pf6N2E2_4220	0.60	+0.6
4,911,223	+		Pf6N2E2_4220	0.63	-0.2
4,911,223	+		Pf6N2E2_4220	0.63	-0.2
4,911,223	+		Pf6N2E2_4220	0.63	+1.5
4,911,223	+		Pf6N2E2_4220	0.63	+0.1
4,911,224	-		Pf6N2E2_4220	0.63	+1.0
4,911,224	-		Pf6N2E2_4220	0.63	-1.3
4,911,224	-		Pf6N2E2_4220	0.63	-0.1
4,911,224	-		Pf6N2E2_4220	0.63	+0.8
4,911,224	-		Pf6N2E2_4220	0.63	+0.5
4,911,224	-		Pf6N2E2_4220	0.63	+0.2
4,911,224	-		Pf6N2E2_4220	0.63	+0.3
4,911,224	-		Pf6N2E2_4220	0.63	+0.4
4,911,224	-		Pf6N2E2_4220	0.63	-3.8
4,911,224	-		Pf6N2E2_4220	0.63	+0.3
4,911,224	-		Pf6N2E2_4220	0.63	+1.2
4,911,224	-		Pf6N2E2_4220	0.63	+0.9
4,911,224	-		Pf6N2E2_4220	0.63	+0.3
4,911,224	-		Pf6N2E2_4220	0.63	+1.6
4,911,342	+		Pf6N2E2_4220	0.84	-0.5
4,911,342	+		Pf6N2E2_4220	0.84	+0.6
4,911,342	+		Pf6N2E2_4220	0.84	-0.5
4,911,342	+		Pf6N2E2_4220	0.84	+0.5
4,911,342	+		Pf6N2E2_4220	0.84	+0.6
4,911,342	+		Pf6N2E2_4220	0.84	+0.5
4,911,342	+		Pf6N2E2_4220	0.84	-0.1
4,911,342	+		Pf6N2E2_4220	0.84	+1.0
4,911,342	+		Pf6N2E2_4220	0.84	+1.0
4,911,342	+		Pf6N2E2_4220	0.84	+0.5
4,911,342	+		Pf6N2E2_4220	0.84	+0.1
4,911,343	-		Pf6N2E2_4220	0.84	-1.1
4,911,343	-		Pf6N2E2_4220	0.84	+0.7
4,911,343	-		Pf6N2E2_4220	0.84	-0.2
4,911,343	-		Pf6N2E2_4220	0.84	-0.5
4,911,343	-		Pf6N2E2_4220	0.84	+0.0
4,911,343	-		Pf6N2E2_4220	0.84	-0.2
4,911,376	+		Pf6N2E2_4220	0.89	+0.4
4,911,376	+		Pf6N2E2_4220	0.89	-0.6
4,911,376	+		Pf6N2E2_4220	0.89	+0.9
4,911,377	-		Pf6N2E2_4220	0.90	+0.6
4,911,377	-		Pf6N2E2_4220	0.90	-0.7
4,911,385	-				-0.1
4,911,413	+				-0.4
4,911,414	-				-1.1
4,911,414	-				+1.1
4,911,414	-				+0.2
4,911,414	-				-1.2
4,911,453	+				+0.3
4,911,453	+				-0.5
4,911,454	-				+1.5
4,911,454	-				-0.0
4,911,529	+		Pf6N2E2_4221	0.24	+0.1
4,911,530	-		Pf6N2E2_4221	0.24	-0.3
4,911,543	+		Pf6N2E2_4221	0.28	-1.0
4,911,543	+		Pf6N2E2_4221	0.28	-0.1
4,911,543	+		Pf6N2E2_4221	0.28	-0.9
4,911,543	+		Pf6N2E2_4221	0.28	+2.0
4,911,543	+		Pf6N2E2_4221	0.28	-0.0
4,911,543	+		Pf6N2E2_4221	0.28	-0.2
4,911,543	+		Pf6N2E2_4221	0.28	+1.5
4,911,543	+		Pf6N2E2_4221	0.28	-0.4
4,911,543	+		Pf6N2E2_4221	0.28	+0.2
4,911,544	-		Pf6N2E2_4221	0.28	+1.3
4,911,544	-		Pf6N2E2_4221	0.28	+0.3
4,911,544	-		Pf6N2E2_4221	0.28	-1.1
4,911,544	-		Pf6N2E2_4221	0.28	+0.4
4,911,544	-		Pf6N2E2_4221	0.28	+0.5
4,911,544	-		Pf6N2E2_4221	0.28	+0.5
4,911,544	-		Pf6N2E2_4221	0.28	+0.5
4,911,544	-		Pf6N2E2_4221	0.28	+0.2
4,911,549	+		Pf6N2E2_4221	0.30	-0.2
4,911,549	+		Pf6N2E2_4221	0.30	+0.5
4,911,550	-		Pf6N2E2_4221	0.30	+0.4
4,911,550	-		Pf6N2E2_4221	0.30	+0.5
4,911,550	-		Pf6N2E2_4221	0.30	+0.1
4,911,550	-		Pf6N2E2_4221	0.30	-0.5