Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4199

Experiment: Doxycycline hyclate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4198 and Pf6N2E2_4199 are separated by 39 nucleotidesPf6N2E2_4199 and Pf6N2E2_4200 are separated by 927 nucleotides Pf6N2E2_4198 - DNA polymerase III beta subunit (EC 2.7.7.7), at 4,886,301 to 4,887,404 _4198 Pf6N2E2_4199 - Chromosomal replication initiator protein DnaA, at 4,887,444 to 4,888,964 _4199 Pf6N2E2_4200 - Ribonuclease P protein component (EC 3.1.26.5), at 4,889,892 to 4,890,089 _4200 Position (kb) 4887 4888 4889Strain fitness (log2 ratio) -2 -1 0 1 2at 4887.423 kb on - strandat 4887.423 kb on - strandat 4887.423 kb on - strandat 4887.426 kb on - strandat 4887.426 kb on - strandat 4887.426 kb on - strandat 4887.426 kb on - strandat 4887.426 kb on - strandat 4889.040 kb on - strandat 4889.040 kb on - strandat 4889.072 kb on + strandat 4889.073 kb on - strandat 4889.073 kb on - strandat 4889.073 kb on - strandat 4889.272 kb on + strandat 4889.284 kb on + strandat 4889.332 kb on + strandat 4889.358 kb on + strandat 4889.371 kb on + strandat 4889.371 kb on + strandat 4889.377 kb on + strandat 4889.377 kb on + strandat 4889.377 kb on + strandat 4889.377 kb on + strandat 4889.377 kb on + strandat 4889.379 kb on + strandat 4889.383 kb on + strandat 4889.383 kb on + strandat 4889.383 kb on + strandat 4889.383 kb on + strandat 4889.422 kb on + strandat 4889.422 kb on + strandat 4889.422 kb on + strandat 4889.422 kb on + strandat 4889.422 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml
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4,887,423 - +0.2
4,887,423 - +0.3
4,887,423 - -0.2
4,887,426 - +0.2
4,887,426 - -0.3
4,887,426 - +2.1
4,887,426 - +0.3
4,887,426 - -0.2
4,889,040 - +0.1
4,889,040 - -1.8
4,889,072 + +1.3
4,889,073 - -0.1
4,889,073 - +0.5
4,889,073 - +0.5
4,889,272 + -1.6
4,889,284 + -0.3
4,889,332 + -0.1
4,889,358 + -0.1
4,889,371 + +0.9
4,889,371 + -0.1
4,889,377 + -0.6
4,889,377 + -1.9
4,889,377 + -0.4
4,889,377 + -0.1
4,889,377 + +0.0
4,889,379 + -1.5
4,889,383 + +1.6
4,889,383 + +0.4
4,889,383 + -0.5
4,889,383 + +0.3
4,889,422 + +0.6
4,889,422 + +0.5
4,889,422 + -0.7
4,889,422 + -0.5
4,889,422 + -2.5

Or see this region's nucleotide sequence