Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4155

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
4,835,496	+		Pf6N2E2_4154	0.47	-0.3
4,835,496	+		Pf6N2E2_4154	0.47	+1.5
4,835,496	+		Pf6N2E2_4154	0.47	+0.6
4,835,496	+		Pf6N2E2_4154	0.47	+1.6
4,835,496	+		Pf6N2E2_4154	0.47	-0.0
4,835,496	+		Pf6N2E2_4154	0.47	+0.1
4,835,497	-		Pf6N2E2_4154	0.47	+1.3
4,835,497	-		Pf6N2E2_4154	0.47	-0.2
4,835,517	+		Pf6N2E2_4154	0.48	-0.4
4,835,518	-		Pf6N2E2_4154	0.48	-0.5
4,835,518	-		Pf6N2E2_4154	0.48	+0.2
4,835,518	-		Pf6N2E2_4154	0.48	+0.2
4,835,676	+		Pf6N2E2_4154	0.59	-0.6
4,835,676	+		Pf6N2E2_4154	0.59	+2.1
4,835,676	+		Pf6N2E2_4154	0.59	+0.6
4,835,677	-		Pf6N2E2_4154	0.59	-0.7
4,835,677	-		Pf6N2E2_4154	0.59	+0.7
4,835,711	+		Pf6N2E2_4154	0.61	+0.3
4,835,712	-		Pf6N2E2_4154	0.61	+0.7
4,835,712	-		Pf6N2E2_4154	0.61	+0.1
4,835,738	+		Pf6N2E2_4154	0.63	+0.1
4,835,739	-		Pf6N2E2_4154	0.63	+0.0
4,835,844	+		Pf6N2E2_4154	0.70	-0.2
4,835,884	+		Pf6N2E2_4154	0.73	-0.7
4,835,885	-		Pf6N2E2_4154	0.73	+1.0
4,835,885	-		Pf6N2E2_4154	0.73	-0.7
4,835,996	+		Pf6N2E2_4154	0.80	-0.2
4,835,996	+		Pf6N2E2_4154	0.80	-0.9
4,835,997	-		Pf6N2E2_4154	0.80	-0.5
4,835,997	-		Pf6N2E2_4154	0.80	+0.3
4,835,997	-		Pf6N2E2_4154	0.80	-0.4
4,835,997	-		Pf6N2E2_4154	0.80	+0.6
4,836,002	+		Pf6N2E2_4154	0.80	+0.2
4,836,003	-		Pf6N2E2_4154	0.80	-1.1
4,836,087	+		Pf6N2E2_4154	0.86	+0.2
4,836,087	+		Pf6N2E2_4154	0.86	+0.9
4,836,089	+		Pf6N2E2_4154	0.86	+0.3
4,836,089	+		Pf6N2E2_4154	0.86	+0.4
4,836,089	+		Pf6N2E2_4154	0.86	-1.3
4,836,089	+		Pf6N2E2_4154	0.86	+0.6
4,836,090	-		Pf6N2E2_4154	0.86	+0.1
4,836,090	-		Pf6N2E2_4154	0.86	-0.7
4,836,090	-		Pf6N2E2_4154	0.86	-0.1
4,836,090	-		Pf6N2E2_4154	0.86	+0.4
4,836,090	-		Pf6N2E2_4154	0.86	-0.4
4,836,090	-		Pf6N2E2_4154	0.86	-0.8
4,836,102	-		Pf6N2E2_4154	0.87	-0.1
4,836,327	+				+0.2
4,836,327	+				+1.6
4,836,327	+				+0.3
4,836,327	+				-1.4
4,836,327	+				+0.3
4,836,328	-				+0.5
4,836,328	-				-0.2
4,836,331	+				-0.6
4,836,331	+				-0.5
4,836,332	-				+1.9
4,836,353	-				-0.4
4,836,382	+				-0.5
4,836,382	+				-0.8
4,836,382	+				+0.1
4,836,425	-				-0.6
4,836,436	-				+0.7
4,836,482	+				-1.0
4,836,557	+				-2.9
4,836,730	+		Pf6N2E2_4155	0.32	-3.2
4,836,730	+		Pf6N2E2_4155	0.32	-0.5
4,836,731	-		Pf6N2E2_4155	0.32	-0.5
4,836,731	-		Pf6N2E2_4155	0.32	-1.1
4,836,862	+		Pf6N2E2_4155	0.49	-0.4
4,836,862	+		Pf6N2E2_4155	0.49	-3.1
4,836,862	+		Pf6N2E2_4155	0.49	-2.4
4,836,862	+		Pf6N2E2_4155	0.49	-1.4
4,836,862	+		Pf6N2E2_4155	0.49	-2.2
4,836,863	-		Pf6N2E2_4155	0.49	-1.9
4,836,863	-		Pf6N2E2_4155	0.49	-0.9
4,836,894	-		Pf6N2E2_4155	0.53	-2.7
4,836,894	-		Pf6N2E2_4155	0.53	-0.8
4,836,899	+		Pf6N2E2_4155	0.54	-0.1
4,837,040	+		Pf6N2E2_4155	0.72	-1.6
4,837,040	+		Pf6N2E2_4155	0.72	-2.1
4,837,041	-		Pf6N2E2_4155	0.72	-1.6
4,837,041	-		Pf6N2E2_4155	0.72	-0.9
4,837,074	-		Pf6N2E2_4155	0.76	-1.5
4,837,074	-		Pf6N2E2_4155	0.76	-2.8
4,837,136	+		Pf6N2E2_4155	0.84	-1.3
4,837,136	+		Pf6N2E2_4155	0.84	-2.9
4,837,136	+		Pf6N2E2_4155	0.84	-1.1
4,837,136	+		Pf6N2E2_4155	0.84	-2.2
4,837,136	+		Pf6N2E2_4155	0.84	-1.4
4,837,136	+		Pf6N2E2_4155	0.84	-0.0
4,837,136	+		Pf6N2E2_4155	0.84	-2.4
4,837,136	+		Pf6N2E2_4155	0.84	+0.2
4,837,137	-		Pf6N2E2_4155	0.84	-0.8
4,837,137	-		Pf6N2E2_4155	0.84	-0.5
4,837,137	-		Pf6N2E2_4155	0.84	-0.1
4,837,137	-		Pf6N2E2_4155	0.84	-1.6
4,837,137	-		Pf6N2E2_4155	0.84	-1.6
4,837,137	-		Pf6N2E2_4155	0.84	-0.4
4,837,137	-		Pf6N2E2_4155	0.84	-1.7
4,837,158	+		Pf6N2E2_4155	0.87	-1.4
4,837,159	-		Pf6N2E2_4155	0.87	-1.4
4,837,231	+				-1.8
4,837,231	+				-1.7
4,837,232	-				-2.2
4,837,232	-				-2.0
4,837,232	-				-2.4
4,837,232	-				-1.2
4,837,232	-				-0.7
4,837,273	+				-2.1
4,837,274	-				+1.3
4,837,299	+				-0.6
4,837,340	+				+0.3
4,837,340	+				-0.6
4,837,341	-				+0.0
4,837,341	-				+0.5
4,837,358	+				-2.0
4,837,359	-				+0.2
4,837,359	-				-0.1
4,837,580	+		Pf6N2E2_4156	0.10	-0.8
4,837,581	-		Pf6N2E2_4156	0.10	-0.4
4,837,581	-		Pf6N2E2_4156	0.10	+1.2
4,837,702	+		Pf6N2E2_4156	0.16	+0.1
4,837,702	+		Pf6N2E2_4156	0.16	-0.9
4,837,702	+		Pf6N2E2_4156	0.16	+0.2
4,837,702	+		Pf6N2E2_4156	0.16	-1.2
4,837,702	+		Pf6N2E2_4156	0.16	+0.3
4,837,702	+		Pf6N2E2_4156	0.16	-0.1
4,837,702	+		Pf6N2E2_4156	0.16	-1.3
4,837,702	+		Pf6N2E2_4156	0.16	+0.2
4,837,702	+		Pf6N2E2_4156	0.16	-0.6
4,837,702	+		Pf6N2E2_4156	0.16	-0.6
4,837,702	+		Pf6N2E2_4156	0.16	-0.5
4,837,702	+		Pf6N2E2_4156	0.16	-1.3
4,837,702	+		Pf6N2E2_4156	0.16	+0.9
4,837,702	+		Pf6N2E2_4156	0.16	-0.2
4,837,702	+		Pf6N2E2_4156	0.16	-1.1
4,837,702	+		Pf6N2E2_4156	0.16	-0.1
4,837,702	+		Pf6N2E2_4156	0.16	+0.5
4,837,703	-		Pf6N2E2_4156	0.16	+0.3
4,837,703	-		Pf6N2E2_4156	0.16	+0.4
4,837,703	-		Pf6N2E2_4156	0.16	+0.7
4,837,703	-		Pf6N2E2_4156	0.16	-0.2
4,837,703	-		Pf6N2E2_4156	0.16	+0.4
4,837,703	-		Pf6N2E2_4156	0.16	+0.6
4,837,703	-		Pf6N2E2_4156	0.16	-0.1
4,837,703	-		Pf6N2E2_4156	0.16	+0.6
4,837,703	-		Pf6N2E2_4156	0.16	+0.3
4,837,703	-		Pf6N2E2_4156	0.16	+0.2
4,837,703	-		Pf6N2E2_4156	0.16	-0.4
4,837,703	-		Pf6N2E2_4156	0.16	-0.6
4,837,703	-		Pf6N2E2_4156	0.16	+0.2
4,837,703	-		Pf6N2E2_4156	0.16	-1.0
4,837,703	-		Pf6N2E2_4156	0.16	+0.8
4,837,703	-		Pf6N2E2_4156	0.16	+0.3
4,837,703	-		Pf6N2E2_4156	0.16	+0.8
4,837,703	-		Pf6N2E2_4156	0.16	-1.5
4,838,200	+		Pf6N2E2_4156	0.40	+0.1
4,838,200	+		Pf6N2E2_4156	0.40	-0.6
4,838,201	-		Pf6N2E2_4156	0.40	-0.8