Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3876

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
4,505,392	+		Pf6N2E2_3874	0.67	+0.8
4,505,392	+		Pf6N2E2_3874	0.67	-0.4
4,505,392	+		Pf6N2E2_3874	0.67	-0.0
4,505,393	-		Pf6N2E2_3874	0.67	-0.9
4,505,452	+		Pf6N2E2_3874	0.76	+1.9
4,505,453	-		Pf6N2E2_3874	0.76	-1.6
4,505,529	+		Pf6N2E2_3874	0.88	-0.2
4,505,529	+		Pf6N2E2_3874	0.88	+0.6
4,505,529	+		Pf6N2E2_3874	0.88	+0.5
4,505,529	+		Pf6N2E2_3874	0.88	-0.1
4,505,529	+		Pf6N2E2_3874	0.88	-0.3
4,505,530	-		Pf6N2E2_3874	0.88	+0.9
4,505,530	-		Pf6N2E2_3874	0.88	+0.1
4,505,530	-		Pf6N2E2_3874	0.88	+0.4
4,505,530	-		Pf6N2E2_3874	0.88	+1.1
4,505,590	+				+0.5
4,505,590	+				-1.2
4,505,590	+				-1.6
4,505,591	-				+1.1
4,505,591	-				+1.6
4,505,591	-				+0.3
4,505,591	-				+0.6
4,505,591	-				+2.1
4,505,591	-				+1.0
4,505,594	+				+0.4
4,505,594	+				+0.0
4,505,594	+				-0.6
4,505,594	+				+0.5
4,505,594	+				+0.4
4,505,594	+				+1.4
4,505,594	+				+1.0
4,505,594	+				+0.2
4,505,595	-				+0.2
4,505,595	-				+1.2
4,505,595	-				+0.3
4,505,595	-				+0.2
4,505,595	-				+1.8
4,505,595	-				+0.9
4,505,595	-				+0.7
4,505,595	-				+0.2
4,505,596	+				-0.5
4,505,596	+				+0.7
4,505,596	+				+0.8
4,505,596	+				+0.4
4,505,596	+				-0.9
4,505,596	+				-0.1
4,505,597	-				+0.9
4,505,597	-				+1.0
4,505,597	-				+0.2
4,505,597	-				+0.8
4,505,597	-				+0.3
4,505,597	-				+1.2
4,505,597	-				+0.6
4,505,597	-				+0.7
4,505,597	-				-0.1
4,505,652	+				-0.2
4,505,653	-				+0.7
4,505,745	+				+0.3
4,505,746	-				-0.5
4,505,746	-				-0.9
4,505,758	+				-0.2
4,505,758	+				-0.3
4,505,767	+				-1.1
4,505,768	-				+0.0
4,505,838	+				-0.2
4,505,838	+				+0.3
4,505,838	+				-0.6
4,505,839	-				+0.7
4,505,839	-				-1.3
4,505,856	+				-0.1
4,505,856	+				-1.3
4,505,856	+				+1.0
4,505,857	-				+0.8
4,505,857	-				+1.4
4,505,931	-		Pf6N2E2_3875	0.38	-0.7
4,505,931	-		Pf6N2E2_3875	0.38	-0.7
4,506,044	+				-0.5
4,506,044	+				+1.4
4,506,045	-				+1.4
4,506,045	-				+1.4
4,506,049	+				+0.2
4,506,049	+				-0.1
4,506,049	+				-0.6
4,506,049	+				-1.1
4,506,050	-				+1.0
4,506,050	-				+0.1
4,506,091	+				-1.5
4,506,092	-				+0.9
4,506,102	+				-0.1
4,506,103	-				+0.5
4,506,143	+				+0.3
4,506,143	+				+0.4
4,506,143	+				-0.6
4,506,144	-				-0.2
4,506,149	+				+1.1
4,506,149	+				+0.9
4,506,149	+				+1.0
4,506,149	+				-0.2
4,506,149	+				+0.5
4,506,150	-				+0.8
4,506,158	+				-0.1
4,506,255	+				+0.1
4,506,255	+				-0.6
4,506,256	-				+0.8
4,506,256	-				+0.5
4,506,256	-				+0.5
4,506,287	+				+0.0
4,506,287	+				+1.0
4,506,287	+				+0.4
4,506,288	-				-1.1
4,506,288	-				+1.3
4,506,331	-				-2.3
4,506,494	+		Pf6N2E2_3876	0.18	-0.8
4,506,495	-		Pf6N2E2_3876	0.18	-3.6
4,506,495	-		Pf6N2E2_3876	0.18	-1.6
4,506,495	-		Pf6N2E2_3876	0.18	+0.2
4,506,495	-		Pf6N2E2_3876	0.18	-0.5
4,506,495	-		Pf6N2E2_3876	0.18	-2.3
4,506,578	+		Pf6N2E2_3876	0.25	-2.1
4,506,677	+		Pf6N2E2_3876	0.34	-1.1
4,506,677	+		Pf6N2E2_3876	0.34	-1.3
4,506,734	+		Pf6N2E2_3876	0.39	+0.7
4,506,735	-		Pf6N2E2_3876	0.39	-0.5
4,506,735	-		Pf6N2E2_3876	0.39	-0.6
4,506,735	-		Pf6N2E2_3876	0.39	-2.9
4,506,735	-		Pf6N2E2_3876	0.39	-2.5
4,507,199	+		Pf6N2E2_3876	0.81	+0.5
4,507,262	-		Pf6N2E2_3876	0.87	-0.9
4,507,590	+				-1.4
4,507,590	+				+0.7
4,507,590	+				+0.1
4,507,590	+				-0.2
4,507,590	+				-0.4
4,507,590	+				+0.6
4,507,590	+				+0.2
4,507,590	+				-0.5
4,507,590	+				-0.6
4,507,590	+				+1.0
4,507,590	+				+0.6
4,507,591	-				+0.9
4,507,591	-				-0.2
4,507,591	-				+0.4
4,507,591	-				-1.5
4,507,591	-				-0.9
4,507,591	-				+0.5
4,507,591	-				-0.6
4,507,591	-				-1.4
4,507,627	+				+1.1
4,507,659	+				+1.3
4,507,690	+				-1.6
4,507,690	+				+0.3
4,507,690	+				+1.3
4,507,690	+				-0.3
4,507,690	+				+0.6
4,507,690	+				-2.2
4,507,690	+				-0.0
4,507,690	+				-0.3
4,507,690	+				+0.8
4,507,690	+				+1.3
4,507,690	+				+0.7
4,507,690	+				-1.5
4,507,690	+				+0.8
4,507,690	+				-0.3
4,507,690	+				-0.0
4,507,690	+				+1.5
4,507,691	-				+0.5
4,507,691	-				+0.4
4,507,691	-				+1.3
4,507,691	-				+0.1
4,507,691	-				+0.5
4,507,691	-				+0.0
4,507,691	-				+0.6
4,507,691	-				+0.0
4,507,691	-				+0.5
4,507,691	-				-0.8
4,507,691	-				+0.2
4,507,691	-				+1.2
4,507,691	-				-1.3
4,507,691	-				+1.0
4,507,691	-				+0.1
4,507,691	-				+0.6
4,507,691	-				+1.8
4,507,694	+				+0.9
4,507,694	+				+1.0
4,507,694	+				+0.1
4,507,694	+				+0.4
4,507,695	-				+1.5
4,507,695	-				-0.4
4,507,695	-				+0.8
4,507,695	-				-0.5
4,507,695	-				+2.5
4,507,695	-				+0.7
4,507,758	+				+0.4
4,507,758	+				-0.3
4,507,759	-				+0.2
4,507,876	-				-0.2
4,507,876	-				+0.0
4,508,058	+		Pf6N2E2_3877	0.14	+0.6
4,508,058	+		Pf6N2E2_3877	0.14	-0.0
4,508,059	-		Pf6N2E2_3877	0.14	+0.4
4,508,059	-		Pf6N2E2_3877	0.14	-0.6
4,508,163	-		Pf6N2E2_3877	0.18	+0.9
4,508,163	-		Pf6N2E2_3877	0.18	-0.0
4,508,265	+		Pf6N2E2_3877	0.21	+0.5
4,508,317	-		Pf6N2E2_3877	0.23	-2.5
4,508,317	-		Pf6N2E2_3877	0.23	+1.0
4,508,397	+		Pf6N2E2_3877	0.26	-0.7
4,508,397	+		Pf6N2E2_3877	0.26	+0.3
4,508,398	-		Pf6N2E2_3877	0.26	+0.9
4,508,398	-		Pf6N2E2_3877	0.26	+2.0