Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_380

Experiment: Doxycycline hyclate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_379 and Pf6N2E2_380 are separated by 214 nucleotidesPf6N2E2_380 and Pf6N2E2_381 are separated by 40 nucleotides Pf6N2E2_379 - hypothetical protein, at 445,749 to 446,549 _379 Pf6N2E2_380 - putative ABC transporter, periplasmic substrate-binding protein, at 446,764 to 447,513 _380 Pf6N2E2_381 - hypothetical protein, at 447,554 to 448,942 _381 Position (kb) 446 447 448Strain fitness (log2 ratio) -2 -1 0 1at 446.338 kb on + strand, within Pf6N2E2_379at 446.338 kb on + strand, within Pf6N2E2_379at 446.339 kb on - strand, within Pf6N2E2_379at 446.339 kb on - strand, within Pf6N2E2_379at 446.339 kb on - strand, within Pf6N2E2_379at 446.339 kb on - strand, within Pf6N2E2_379at 446.342 kb on + strand, within Pf6N2E2_379at 446.343 kb on - strand, within Pf6N2E2_379at 446.395 kb on + strand, within Pf6N2E2_379at 446.395 kb on + strand, within Pf6N2E2_379at 446.395 kb on + strand, within Pf6N2E2_379at 446.395 kb on + strand, within Pf6N2E2_379at 446.396 kb on - strand, within Pf6N2E2_379at 446.396 kb on - strand, within Pf6N2E2_379at 446.413 kb on + strand, within Pf6N2E2_379at 446.413 kb on + strand, within Pf6N2E2_379at 446.413 kb on + strand, within Pf6N2E2_379at 446.413 kb on + strand, within Pf6N2E2_379at 446.414 kb on - strand, within Pf6N2E2_379at 446.414 kb on - strand, within Pf6N2E2_379at 446.694 kb on + strandat 446.694 kb on + strandat 446.695 kb on - strandat 446.700 kb on + strandat 446.801 kb on + strandat 446.802 kb on - strandat 446.837 kb on - strandat 446.866 kb on + strand, within Pf6N2E2_380at 446.867 kb on - strand, within Pf6N2E2_380at 446.867 kb on - strand, within Pf6N2E2_380at 446.873 kb on - strand, within Pf6N2E2_380at 446.873 kb on - strand, within Pf6N2E2_380at 446.970 kb on + strand, within Pf6N2E2_380at 447.016 kb on + strand, within Pf6N2E2_380at 447.016 kb on + strand, within Pf6N2E2_380at 447.016 kb on + strand, within Pf6N2E2_380at 447.017 kb on - strand, within Pf6N2E2_380at 447.052 kb on + strand, within Pf6N2E2_380at 447.052 kb on + strand, within Pf6N2E2_380at 447.052 kb on + strand, within Pf6N2E2_380at 447.053 kb on - strand, within Pf6N2E2_380at 447.311 kb on - strand, within Pf6N2E2_380at 447.314 kb on - strand, within Pf6N2E2_380at 447.314 kb on - strand, within Pf6N2E2_380at 447.371 kb on - strand, within Pf6N2E2_380at 447.371 kb on - strand, within Pf6N2E2_380at 447.371 kb on - strand, within Pf6N2E2_380at 447.385 kb on + strand, within Pf6N2E2_380at 447.385 kb on + strand, within Pf6N2E2_380at 447.386 kb on - strand, within Pf6N2E2_380at 447.386 kb on - strand, within Pf6N2E2_380at 447.619 kb on - strandat 447.619 kb on - strandat 447.619 kb on - strandat 447.619 kb on - strandat 447.619 kb on - strandat 447.630 kb on + strandat 447.642 kb on + strandat 447.642 kb on + strandat 447.642 kb on + strandat 447.642 kb on + strandat 447.643 kb on - strandat 447.643 kb on - strandat 447.643 kb on - strandat 447.645 kb on + strandat 447.645 kb on + strandat 447.645 kb on + strandat 447.645 kb on + strandat 447.645 kb on + strandat 447.645 kb on + strandat 447.646 kb on - strandat 447.646 kb on - strandat 447.646 kb on - strandat 447.646 kb on - strandat 447.646 kb on - strandat 447.648 kb on + strandat 447.649 kb on - strandat 447.859 kb on + strand, within Pf6N2E2_381at 447.859 kb on + strand, within Pf6N2E2_381at 447.859 kb on + strand, within Pf6N2E2_381at 447.860 kb on - strand, within Pf6N2E2_381at 447.860 kb on - strand, within Pf6N2E2_381at 447.860 kb on - strand, within Pf6N2E2_381at 447.860 kb on - strand, within Pf6N2E2_381at 447.860 kb on - strand, within Pf6N2E2_381at 448.039 kb on - strand, within Pf6N2E2_381at 448.039 kb on - strand, within Pf6N2E2_381at 448.039 kb on - strand, within Pf6N2E2_381at 448.039 kb on - strand, within Pf6N2E2_381at 448.045 kb on + strand, within Pf6N2E2_381at 448.096 kb on + strand, within Pf6N2E2_381at 448.096 kb on + strand, within Pf6N2E2_381at 448.097 kb on - strand, within Pf6N2E2_381at 448.098 kb on + strand, within Pf6N2E2_381at 448.098 kb on + strand, within Pf6N2E2_381at 448.098 kb on + strand, within Pf6N2E2_381at 448.098 kb on + strand, within Pf6N2E2_381at 448.099 kb on - strand, within Pf6N2E2_381at 448.099 kb on - strand, within Pf6N2E2_381at 448.201 kb on + strand, within Pf6N2E2_381at 448.201 kb on + strand, within Pf6N2E2_381at 448.202 kb on - strand, within Pf6N2E2_381at 448.356 kb on + strand, within Pf6N2E2_381at 448.356 kb on + strand, within Pf6N2E2_381at 448.357 kb on - strand, within Pf6N2E2_381at 448.357 kb on - strand, within Pf6N2E2_381at 448.360 kb on - strand, within Pf6N2E2_381at 448.404 kb on + strand, within Pf6N2E2_381at 448.404 kb on + strand, within Pf6N2E2_381at 448.404 kb on + strand, within Pf6N2E2_381at 448.405 kb on - strand, within Pf6N2E2_381at 448.470 kb on + strand, within Pf6N2E2_381

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml
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446,338 + Pf6N2E2_379 0.74 +0.2
446,338 + Pf6N2E2_379 0.74 +1.0
446,339 - Pf6N2E2_379 0.74 +1.6
446,339 - Pf6N2E2_379 0.74 -1.4
446,339 - Pf6N2E2_379 0.74 +0.6
446,339 - Pf6N2E2_379 0.74 +0.2
446,342 + Pf6N2E2_379 0.74 -2.3
446,343 - Pf6N2E2_379 0.74 +0.1
446,395 + Pf6N2E2_379 0.81 +0.3
446,395 + Pf6N2E2_379 0.81 +0.6
446,395 + Pf6N2E2_379 0.81 -0.8
446,395 + Pf6N2E2_379 0.81 -0.6
446,396 - Pf6N2E2_379 0.81 +1.4
446,396 - Pf6N2E2_379 0.81 +0.5
446,413 + Pf6N2E2_379 0.83 -1.1
446,413 + Pf6N2E2_379 0.83 +1.1
446,413 + Pf6N2E2_379 0.83 +0.8
446,413 + Pf6N2E2_379 0.83 +0.7
446,414 - Pf6N2E2_379 0.83 +0.5
446,414 - Pf6N2E2_379 0.83 +0.1
446,694 + -0.5
446,694 + +1.0
446,695 - +0.8
446,700 + +0.0
446,801 + +1.3
446,802 - +1.1
446,837 - -0.5
446,866 + Pf6N2E2_380 0.14 -0.6
446,867 - Pf6N2E2_380 0.14 -0.6
446,867 - Pf6N2E2_380 0.14 -1.6
446,873 - Pf6N2E2_380 0.15 +0.2
446,873 - Pf6N2E2_380 0.15 -1.2
446,970 + Pf6N2E2_380 0.27 +0.5
447,016 + Pf6N2E2_380 0.34 +0.2
447,016 + Pf6N2E2_380 0.34 -1.6
447,016 + Pf6N2E2_380 0.34 +1.2
447,017 - Pf6N2E2_380 0.34 -0.2
447,052 + Pf6N2E2_380 0.38 -2.1
447,052 + Pf6N2E2_380 0.38 -1.6
447,052 + Pf6N2E2_380 0.38 -0.2
447,053 - Pf6N2E2_380 0.39 -0.7
447,311 - Pf6N2E2_380 0.73 -0.2
447,314 - Pf6N2E2_380 0.73 -2.0
447,314 - Pf6N2E2_380 0.73 -1.0
447,371 - Pf6N2E2_380 0.81 +0.4
447,371 - Pf6N2E2_380 0.81 -0.2
447,371 - Pf6N2E2_380 0.81 -0.4
447,385 + Pf6N2E2_380 0.83 -0.3
447,385 + Pf6N2E2_380 0.83 -0.1
447,386 - Pf6N2E2_380 0.83 +0.2
447,386 - Pf6N2E2_380 0.83 -0.5
447,619 - +0.5
447,619 - +0.9
447,619 - +1.4
447,619 - +0.2
447,619 - +0.1
447,630 + -0.5
447,642 + -0.5
447,642 + +0.4
447,642 + +0.3
447,642 + +0.7
447,643 - +0.9
447,643 - -0.6
447,643 - -0.5
447,645 + -0.2
447,645 + -0.2
447,645 + -1.8
447,645 + -0.4
447,645 + +1.5
447,645 + -0.2
447,646 - +0.7
447,646 - -0.5
447,646 - +1.3
447,646 - +0.4
447,646 - -0.0
447,648 + +1.5
447,649 - +1.2
447,859 + Pf6N2E2_381 0.22 -1.0
447,859 + Pf6N2E2_381 0.22 +1.6
447,859 + Pf6N2E2_381 0.22 -1.0
447,860 - Pf6N2E2_381 0.22 -0.9
447,860 - Pf6N2E2_381 0.22 -0.0
447,860 - Pf6N2E2_381 0.22 +1.5
447,860 - Pf6N2E2_381 0.22 -0.1
447,860 - Pf6N2E2_381 0.22 +1.5
448,039 - Pf6N2E2_381 0.35 -0.6
448,039 - Pf6N2E2_381 0.35 +0.4
448,039 - Pf6N2E2_381 0.35 -1.2
448,039 - Pf6N2E2_381 0.35 -1.0
448,045 + Pf6N2E2_381 0.35 +0.8
448,096 + Pf6N2E2_381 0.39 -0.4
448,096 + Pf6N2E2_381 0.39 -2.0
448,097 - Pf6N2E2_381 0.39 +0.5
448,098 + Pf6N2E2_381 0.39 -1.2
448,098 + Pf6N2E2_381 0.39 +1.2
448,098 + Pf6N2E2_381 0.39 -0.6
448,098 + Pf6N2E2_381 0.39 +0.3
448,099 - Pf6N2E2_381 0.39 +0.0
448,099 - Pf6N2E2_381 0.39 +0.1
448,201 + Pf6N2E2_381 0.47 +0.6
448,201 + Pf6N2E2_381 0.47 +0.8
448,202 - Pf6N2E2_381 0.47 -1.2
448,356 + Pf6N2E2_381 0.58 +0.5
448,356 + Pf6N2E2_381 0.58 -0.5
448,357 - Pf6N2E2_381 0.58 -1.6
448,357 - Pf6N2E2_381 0.58 +0.6
448,360 - Pf6N2E2_381 0.58 -0.8
448,404 + Pf6N2E2_381 0.61 +0.6
448,404 + Pf6N2E2_381 0.61 -1.2
448,404 + Pf6N2E2_381 0.61 -2.3
448,405 - Pf6N2E2_381 0.61 -0.5
448,470 + Pf6N2E2_381 0.66 +1.0

Or see this region's nucleotide sequence