Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3763

Experiment: Doxycycline hyclate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3762 and Pf6N2E2_3763 overlap by 36 nucleotidesPf6N2E2_3763 and Pf6N2E2_3764 are separated by 106 nucleotidesPf6N2E2_3764 and Pf6N2E2_3765 are separated by 11 nucleotides Pf6N2E2_3762 - NADP-dependent malic enzyme (EC 1.1.1.40), at 4,384,473 to 4,385,741 _3762 Pf6N2E2_3763 - hypothetical protein, at 4,385,706 to 4,385,819 _3763 Pf6N2E2_3764 - Thermonuclease family protein, at 4,385,926 to 4,386,738 _3764 Pf6N2E2_3765 - LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-dependent, at 4,386,750 to 4,386,974 _3765 Position (kb) 4385 4386Strain fitness (log2 ratio) -2 -1 0 1 2at 4384.788 kb on + strand, within Pf6N2E2_3762at 4384.789 kb on - strand, within Pf6N2E2_3762at 4384.811 kb on - strand, within Pf6N2E2_3762at 4385.041 kb on + strand, within Pf6N2E2_3762at 4385.041 kb on + strand, within Pf6N2E2_3762at 4385.041 kb on + strand, within Pf6N2E2_3762at 4385.041 kb on + strand, within Pf6N2E2_3762at 4385.042 kb on - strand, within Pf6N2E2_3762at 4385.042 kb on - strand, within Pf6N2E2_3762at 4385.427 kb on + strand, within Pf6N2E2_3762at 4385.427 kb on + strand, within Pf6N2E2_3762at 4385.427 kb on + strand, within Pf6N2E2_3762at 4385.428 kb on - strand, within Pf6N2E2_3762at 4385.504 kb on + strand, within Pf6N2E2_3762at 4385.566 kb on + strand, within Pf6N2E2_3762at 4385.566 kb on + strand, within Pf6N2E2_3762at 4385.566 kb on + strand, within Pf6N2E2_3762at 4385.567 kb on - strand, within Pf6N2E2_3762at 4385.567 kb on - strand, within Pf6N2E2_3762at 4385.567 kb on - strand, within Pf6N2E2_3762at 4385.567 kb on - strand, within Pf6N2E2_3762at 4385.702 kb on + strandat 4385.759 kb on + strand, within Pf6N2E2_3763at 4385.760 kb on - strand, within Pf6N2E2_3763at 4385.760 kb on - strand, within Pf6N2E2_3763at 4386.377 kb on + strand, within Pf6N2E2_3764at 4386.377 kb on + strand, within Pf6N2E2_3764at 4386.377 kb on + strand, within Pf6N2E2_3764at 4386.377 kb on + strand, within Pf6N2E2_3764at 4386.378 kb on - strand, within Pf6N2E2_3764at 4386.378 kb on - strand, within Pf6N2E2_3764at 4386.378 kb on - strand, within Pf6N2E2_3764at 4386.401 kb on + strand, within Pf6N2E2_3764at 4386.402 kb on - strand, within Pf6N2E2_3764at 4386.402 kb on - strand, within Pf6N2E2_3764at 4386.575 kb on + strand, within Pf6N2E2_3764at 4386.575 kb on + strand, within Pf6N2E2_3764at 4386.575 kb on + strand, within Pf6N2E2_3764at 4386.576 kb on - strand, within Pf6N2E2_3764at 4386.576 kb on - strand, within Pf6N2E2_3764at 4386.576 kb on - strand, within Pf6N2E2_3764at 4386.576 kb on - strand, within Pf6N2E2_3764

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml
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4,384,788 + Pf6N2E2_3762 0.25 -1.5
4,384,789 - Pf6N2E2_3762 0.25 -2.0
4,384,811 - Pf6N2E2_3762 0.27 -0.5
4,385,041 + Pf6N2E2_3762 0.45 -1.5
4,385,041 + Pf6N2E2_3762 0.45 -1.2
4,385,041 + Pf6N2E2_3762 0.45 -1.8
4,385,041 + Pf6N2E2_3762 0.45 -2.3
4,385,042 - Pf6N2E2_3762 0.45 -1.0
4,385,042 - Pf6N2E2_3762 0.45 -1.5
4,385,427 + Pf6N2E2_3762 0.75 -1.5
4,385,427 + Pf6N2E2_3762 0.75 -2.5
4,385,427 + Pf6N2E2_3762 0.75 -0.8
4,385,428 - Pf6N2E2_3762 0.75 +0.5
4,385,504 + Pf6N2E2_3762 0.81 +1.0
4,385,566 + Pf6N2E2_3762 0.86 -1.9
4,385,566 + Pf6N2E2_3762 0.86 -0.5
4,385,566 + Pf6N2E2_3762 0.86 -0.1
4,385,567 - Pf6N2E2_3762 0.86 +0.2
4,385,567 - Pf6N2E2_3762 0.86 -0.0
4,385,567 - Pf6N2E2_3762 0.86 -2.0
4,385,567 - Pf6N2E2_3762 0.86 -1.1
4,385,702 + -0.3
4,385,759 + Pf6N2E2_3763 0.46 -0.2
4,385,760 - Pf6N2E2_3763 0.47 -0.9
4,385,760 - Pf6N2E2_3763 0.47 -2.1
4,386,377 + Pf6N2E2_3764 0.55 +0.8
4,386,377 + Pf6N2E2_3764 0.55 +0.9
4,386,377 + Pf6N2E2_3764 0.55 +0.1
4,386,377 + Pf6N2E2_3764 0.55 +0.6
4,386,378 - Pf6N2E2_3764 0.56 +0.6
4,386,378 - Pf6N2E2_3764 0.56 +0.4
4,386,378 - Pf6N2E2_3764 0.56 -0.4
4,386,401 + Pf6N2E2_3764 0.58 +1.9
4,386,402 - Pf6N2E2_3764 0.59 +1.4
4,386,402 - Pf6N2E2_3764 0.59 -0.4
4,386,575 + Pf6N2E2_3764 0.80 +0.5
4,386,575 + Pf6N2E2_3764 0.80 +1.1
4,386,575 + Pf6N2E2_3764 0.80 +0.2
4,386,576 - Pf6N2E2_3764 0.80 +0.8
4,386,576 - Pf6N2E2_3764 0.80 +0.1
4,386,576 - Pf6N2E2_3764 0.80 +1.6
4,386,576 - Pf6N2E2_3764 0.80 -0.9

Or see this region's nucleotide sequence