Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3620

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
4,214,916	+		Pf6N2E2_3619	0.43	+1.0
4,214,916	+		Pf6N2E2_3619	0.43	+1.2
4,215,087	-		Pf6N2E2_3619	0.54	+0.5
4,215,132	-		Pf6N2E2_3619	0.57	+0.0
4,215,132	-		Pf6N2E2_3619	0.57	-1.5
4,215,132	-		Pf6N2E2_3619	0.57	+0.4
4,215,132	-		Pf6N2E2_3619	0.57	-1.6
4,215,132	-		Pf6N2E2_3619	0.57	+0.1
4,215,132	-		Pf6N2E2_3619	0.57	-0.3
4,215,350	-		Pf6N2E2_3619	0.72	-0.4
4,215,350	-		Pf6N2E2_3619	0.72	-0.8
4,215,350	-		Pf6N2E2_3619	0.72	-0.7
4,215,350	-		Pf6N2E2_3619	0.72	-0.1
4,215,350	-		Pf6N2E2_3619	0.72	-0.6
4,215,350	-		Pf6N2E2_3619	0.72	+1.1
4,215,350	-		Pf6N2E2_3619	0.72	+0.2
4,215,350	-		Pf6N2E2_3619	0.72	-0.4
4,215,740	-				-0.5
4,215,740	-				-0.7
4,215,740	-				+2.0
4,215,740	-				-0.3
4,215,765	-				+0.9
4,215,765	-				+0.5
4,215,765	-				-1.1
4,215,808	-				+0.5
4,215,808	-				+1.4
4,215,808	-				+0.5
4,215,809	+				-0.9
4,215,809	+				-0.6
4,215,809	+				+0.8
4,215,810	-				+0.5
4,215,810	-				+0.3
4,215,810	-				+0.7
4,215,810	-				+0.4
4,215,810	-				+0.6
4,216,002	+		Pf6N2E2_3620	0.15	+1.1
4,216,002	+		Pf6N2E2_3620	0.15	+1.3
4,216,002	+		Pf6N2E2_3620	0.15	+2.0
4,216,003	-		Pf6N2E2_3620	0.15	+2.3
4,216,003	-		Pf6N2E2_3620	0.15	+1.6
4,216,003	-		Pf6N2E2_3620	0.15	+2.0
4,216,003	-		Pf6N2E2_3620	0.15	+1.1
4,216,087	-		Pf6N2E2_3620	0.23	-0.0
4,216,087	-		Pf6N2E2_3620	0.23	+1.2
4,216,087	-		Pf6N2E2_3620	0.23	+2.5
4,216,140	+		Pf6N2E2_3620	0.28	+0.6
4,216,140	+		Pf6N2E2_3620	0.28	+2.2
4,216,140	+		Pf6N2E2_3620	0.28	+1.6
4,216,141	-		Pf6N2E2_3620	0.28	+0.8
4,216,141	-		Pf6N2E2_3620	0.28	+1.1
4,216,141	-		Pf6N2E2_3620	0.28	+1.5
4,216,152	+		Pf6N2E2_3620	0.29	+0.4
4,216,170	+		Pf6N2E2_3620	0.31	+0.1
4,216,317	-		Pf6N2E2_3620	0.44	+0.8
4,216,353	+		Pf6N2E2_3620	0.47	+1.1
4,216,353	+		Pf6N2E2_3620	0.47	+0.6
4,216,353	+		Pf6N2E2_3620	0.47	+1.6
4,216,354	-		Pf6N2E2_3620	0.48	-1.1
4,216,457	+		Pf6N2E2_3620	0.57	+1.6
4,216,457	+		Pf6N2E2_3620	0.57	+2.9
4,216,457	+		Pf6N2E2_3620	0.57	-0.3
4,216,458	-		Pf6N2E2_3620	0.57	+0.2
4,216,479	+		Pf6N2E2_3620	0.59	+1.1
4,216,479	+		Pf6N2E2_3620	0.59	+1.7
4,216,480	-		Pf6N2E2_3620	0.59	+0.7
4,216,988	-		Pf6N2E2_3621	0.14	+0.2
4,216,988	-		Pf6N2E2_3621	0.14	-0.2
4,216,988	-		Pf6N2E2_3621	0.14	+0.3
4,217,037	+		Pf6N2E2_3621	0.22	+0.0
4,217,037	+		Pf6N2E2_3621	0.22	+0.0
4,217,037	+		Pf6N2E2_3621	0.22	-0.9
4,217,037	+		Pf6N2E2_3621	0.22	+0.8
4,217,037	+		Pf6N2E2_3621	0.22	-0.6
4,217,037	+		Pf6N2E2_3621	0.22	+0.2
4,217,037	+		Pf6N2E2_3621	0.22	-0.5
4,217,070	+		Pf6N2E2_3621	0.28	+0.2
4,217,070	+		Pf6N2E2_3621	0.28	+0.3
4,217,070	+		Pf6N2E2_3621	0.28	-0.0
4,217,071	-		Pf6N2E2_3621	0.28	+0.9
4,217,071	-		Pf6N2E2_3621	0.28	+0.6
4,217,071	-		Pf6N2E2_3621	0.28	-0.0
4,217,099	-		Pf6N2E2_3621	0.32	+0.0
4,217,099	-		Pf6N2E2_3621	0.32	+1.1
4,217,321	+		Pf6N2E2_3621	0.69	-0.1
4,217,321	+		Pf6N2E2_3621	0.69	+1.0
4,217,322	-		Pf6N2E2_3621	0.69	+1.0
4,217,322	-		Pf6N2E2_3621	0.69	+1.0
4,217,322	-		Pf6N2E2_3621	0.69	-0.8
4,217,322	-		Pf6N2E2_3621	0.69	+0.9
4,217,326	-		Pf6N2E2_3621	0.69	+0.0
4,217,326	-		Pf6N2E2_3621	0.69	-0.3
4,217,496	+				+1.1
4,217,496	+				-1.2
4,217,496	+				+0.1
4,217,497	-				+0.0
4,217,598	+				-0.2
4,217,598	+				-2.1
4,217,598	+				+0.0
4,217,599	-				-1.5
4,217,599	-				-0.3