Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3260

Experiment: Doxycycline hyclate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3258 and Pf6N2E2_3259 overlap by 1 nucleotidesPf6N2E2_3259 and Pf6N2E2_3260 overlap by 1 nucleotidesPf6N2E2_3260 and Pf6N2E2_3261 are separated by 9 nucleotidesPf6N2E2_3261 and Pf6N2E2_3262 are separated by 136 nucleotides Pf6N2E2_3258 - Uncharacterized ABC transporter, periplasmic component YrbD, at 3,767,426 to 3,767,893 _3258 Pf6N2E2_3259 - Uncharacterized ABC transporter, permease component YrbE, at 3,767,893 to 3,768,690 _3259 Pf6N2E2_3260 - Uncharacterized ABC transporter, ATP-binding protein YrbF, at 3,768,690 to 3,769,499 _3260 Pf6N2E2_3261 - hypothetical protein, at 3,769,509 to 3,769,637 _3261 Pf6N2E2_3262 - Arabinose 5-phosphate isomerase (EC 5.3.1.13), at 3,769,774 to 3,770,748 _3262 Position (kb) 3768 3769 3770Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3767.767 kb on - strand, within Pf6N2E2_3258at 3767.773 kb on + strand, within Pf6N2E2_3258at 3767.773 kb on + strand, within Pf6N2E2_3258at 3767.775 kb on + strand, within Pf6N2E2_3258at 3767.776 kb on - strand, within Pf6N2E2_3258at 3767.776 kb on - strand, within Pf6N2E2_3258at 3767.776 kb on - strand, within Pf6N2E2_3258at 3767.779 kb on + strand, within Pf6N2E2_3258at 3767.779 kb on + strand, within Pf6N2E2_3258at 3767.779 kb on + strand, within Pf6N2E2_3258at 3767.780 kb on - strandat 3768.014 kb on + strand, within Pf6N2E2_3259at 3768.055 kb on + strand, within Pf6N2E2_3259at 3768.137 kb on + strand, within Pf6N2E2_3259at 3768.853 kb on + strand, within Pf6N2E2_3260at 3768.853 kb on + strand, within Pf6N2E2_3260at 3768.853 kb on + strand, within Pf6N2E2_3260at 3768.853 kb on + strand, within Pf6N2E2_3260at 3768.853 kb on + strand, within Pf6N2E2_3260at 3768.853 kb on + strand, within Pf6N2E2_3260at 3768.853 kb on + strand, within Pf6N2E2_3260at 3768.853 kb on + strand, within Pf6N2E2_3260at 3768.853 kb on + strand, within Pf6N2E2_3260at 3768.853 kb on + strand, within Pf6N2E2_3260at 3768.857 kb on + strand, within Pf6N2E2_3260at 3768.857 kb on + strand, within Pf6N2E2_3260at 3768.857 kb on + strand, within Pf6N2E2_3260at 3768.857 kb on + strand, within Pf6N2E2_3260at 3768.857 kb on + strand, within Pf6N2E2_3260at 3768.857 kb on + strand, within Pf6N2E2_3260at 3768.857 kb on + strand, within Pf6N2E2_3260at 3768.857 kb on + strand, within Pf6N2E2_3260at 3768.857 kb on + strand, within Pf6N2E2_3260at 3768.857 kb on + strand, within Pf6N2E2_3260at 3769.481 kb on - strandat 3769.501 kb on + strandat 3769.502 kb on - strandat 3769.502 kb on - strandat 3769.590 kb on - strand, within Pf6N2E2_3261at 3769.590 kb on - strand, within Pf6N2E2_3261at 3769.590 kb on - strand, within Pf6N2E2_3261at 3769.590 kb on - strand, within Pf6N2E2_3261at 3769.590 kb on - strand, within Pf6N2E2_3261at 3769.590 kb on - strand, within Pf6N2E2_3261at 3769.590 kb on - strand, within Pf6N2E2_3261at 3769.591 kb on + strand, within Pf6N2E2_3261at 3769.591 kb on + strand, within Pf6N2E2_3261at 3769.592 kb on - strand, within Pf6N2E2_3261at 3769.592 kb on - strand, within Pf6N2E2_3261at 3769.592 kb on - strand, within Pf6N2E2_3261at 3769.646 kb on + strandat 3769.666 kb on + strandat 3769.708 kb on + strandat 3769.708 kb on + strandat 3769.708 kb on + strandat 3769.708 kb on + strandat 3769.736 kb on + strandat 3769.761 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml
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3,767,767 - Pf6N2E2_3258 0.73 -2.8
3,767,773 + Pf6N2E2_3258 0.74 -2.1
3,767,773 + Pf6N2E2_3258 0.74 -2.4
3,767,775 + Pf6N2E2_3258 0.75 -3.9
3,767,776 - Pf6N2E2_3258 0.75 +0.0
3,767,776 - Pf6N2E2_3258 0.75 -1.4
3,767,776 - Pf6N2E2_3258 0.75 -2.1
3,767,779 + Pf6N2E2_3258 0.75 -1.8
3,767,779 + Pf6N2E2_3258 0.75 -3.8
3,767,779 + Pf6N2E2_3258 0.75 -1.7
3,767,780 - -0.8
3,768,014 + Pf6N2E2_3259 0.15 +0.2
3,768,055 + Pf6N2E2_3259 0.20 -0.8
3,768,137 + Pf6N2E2_3259 0.31 -2.9
3,768,853 + Pf6N2E2_3260 0.20 -1.8
3,768,853 + Pf6N2E2_3260 0.20 -3.8
3,768,853 + Pf6N2E2_3260 0.20 -2.8
3,768,853 + Pf6N2E2_3260 0.20 -0.8
3,768,853 + Pf6N2E2_3260 0.20 -2.3
3,768,853 + Pf6N2E2_3260 0.20 -1.3
3,768,853 + Pf6N2E2_3260 0.20 -0.8
3,768,853 + Pf6N2E2_3260 0.20 -2.7
3,768,853 + Pf6N2E2_3260 0.20 -3.9
3,768,853 + Pf6N2E2_3260 0.20 -2.6
3,768,857 + Pf6N2E2_3260 0.21 -2.3
3,768,857 + Pf6N2E2_3260 0.21 -2.6
3,768,857 + Pf6N2E2_3260 0.21 -2.8
3,768,857 + Pf6N2E2_3260 0.21 -2.1
3,768,857 + Pf6N2E2_3260 0.21 -2.1
3,768,857 + Pf6N2E2_3260 0.21 -2.1
3,768,857 + Pf6N2E2_3260 0.21 -3.3
3,768,857 + Pf6N2E2_3260 0.21 -2.9
3,768,857 + Pf6N2E2_3260 0.21 -3.3
3,768,857 + Pf6N2E2_3260 0.21 -2.1
3,769,481 - -3.3
3,769,501 + -2.7
3,769,502 - -2.1
3,769,502 - +0.1
3,769,590 - Pf6N2E2_3261 0.63 +1.7
3,769,590 - Pf6N2E2_3261 0.63 -0.6
3,769,590 - Pf6N2E2_3261 0.63 -0.3
3,769,590 - Pf6N2E2_3261 0.63 +1.2
3,769,590 - Pf6N2E2_3261 0.63 -1.6
3,769,590 - Pf6N2E2_3261 0.63 +1.2
3,769,590 - Pf6N2E2_3261 0.63 +0.5
3,769,591 + Pf6N2E2_3261 0.64 -1.3
3,769,591 + Pf6N2E2_3261 0.64 -0.8
3,769,592 - Pf6N2E2_3261 0.64 +1.2
3,769,592 - Pf6N2E2_3261 0.64 +1.3
3,769,592 - Pf6N2E2_3261 0.64 +1.0
3,769,646 + -0.8
3,769,666 + +0.4
3,769,708 + +3.5
3,769,708 + +2.4
3,769,708 + +1.7
3,769,708 + +3.0
3,769,736 + +4.0
3,769,761 + -0.6

Or see this region's nucleotide sequence