Experiment: Doxycycline hyclate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_275 and Pf6N2E2_276 are separated by 72 nucleotides Pf6N2E2_276 and Pf6N2E2_277 are separated by 10 nucleotides Pf6N2E2_277 and Pf6N2E2_278 are separated by 871 nucleotides
Pf6N2E2_275 - NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3), at 340,017 to 341,801
_275
Pf6N2E2_276 - NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3), at 341,874 to 342,548
_276
Pf6N2E2_277 - NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3), at 342,559 to 342,972
_277
Pf6N2E2_278 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 343,844 to 345,766
_278
Position (kb)
342
343 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 341.828 kb on - strand at 343.016 kb on - strand at 343.036 kb on - strand at 343.106 kb on - strand at 343.118 kb on - strand at 343.125 kb on + strand at 343.126 kb on - strand at 343.189 kb on - strand at 343.189 kb on - strand at 343.269 kb on + strand at 343.269 kb on + strand at 343.269 kb on + strand at 343.269 kb on + strand at 343.270 kb on - strand at 343.270 kb on - strand at 343.294 kb on + strand at 343.294 kb on + strand at 343.294 kb on + strand at 343.294 kb on + strand at 343.332 kb on + strand at 343.354 kb on + strand at 343.549 kb on + strand at 343.550 kb on - strand at 343.556 kb on + strand at 343.556 kb on + strand at 343.556 kb on + strand at 343.556 kb on + strand at 343.556 kb on + strand at 343.557 kb on - strand at 343.557 kb on - strand at 343.634 kb on + strand at 343.634 kb on + strand at 343.635 kb on - strand at 343.701 kb on - strand at 343.701 kb on - strand at 343.752 kb on - strand at 343.752 kb on - strand at 343.759 kb on + strand at 343.759 kb on + strand at 343.775 kb on - strand at 343.792 kb on + strand at 343.792 kb on + strand at 343.792 kb on + strand at 343.792 kb on + strand at 343.792 kb on + strand at 343.793 kb on - strand at 343.793 kb on - strand at 343.793 kb on - strand at 343.793 kb on - strand at 343.793 kb on - strand at 343.793 kb on - strand at 343.793 kb on - strand at 343.793 kb on - strand at 343.793 kb on - strand at 343.793 kb on - strand at 343.793 kb on - strand at 343.796 kb on + strand at 343.796 kb on + strand at 343.797 kb on - strand at 343.797 kb on - strand at 343.797 kb on - strand at 343.797 kb on - strand at 343.797 kb on - strand at 343.829 kb on + strand at 343.830 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml remove 341,828 - +0.4 343,016 - +1.8 343,036 - +1.1 343,106 - +0.2 343,118 - +2.1 343,125 + -0.5 343,126 - -0.5 343,189 - -1.6 343,189 - -0.1 343,269 + +1.2 343,269 + +1.5 343,269 + +2.2 343,269 + +1.2 343,270 - -0.3 343,270 - +1.6 343,294 + +0.5 343,294 + -1.2 343,294 + -0.2 343,294 + +0.9 343,332 + +1.9 343,354 + +0.2 343,549 + +1.8 343,550 - +0.4 343,556 + +0.4 343,556 + +1.3 343,556 + -0.0 343,556 + +0.2 343,556 + +0.9 343,557 - +1.3 343,557 - -0.8 343,634 + +0.2 343,634 + +1.6 343,635 - +0.5 343,701 - +0.2 343,701 - -0.2 343,752 - +0.2 343,752 - -0.5 343,759 + +1.7 343,759 + -0.0 343,775 - +0.5 343,792 + +1.1 343,792 + -1.8 343,792 + +0.3 343,792 + +0.8 343,792 + -0.3 343,793 - +2.6 343,793 - +1.3 343,793 - +1.4 343,793 - +1.4 343,793 - -0.8 343,793 - -0.2 343,793 - +1.1 343,793 - -0.6 343,793 - +1.8 343,793 - +1.4 343,793 - -1.6 343,796 + +0.7 343,796 + +1.3 343,797 - -0.8 343,797 - +0.8 343,797 - -0.2 343,797 - +0.4 343,797 - +0.1 343,829 + +1.3 343,830 - -0.7
Or see this region's nucleotide sequence