Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_276

Experiment: Doxycycline hyclate 0.0001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_275 and Pf6N2E2_276 are separated by 72 nucleotidesPf6N2E2_276 and Pf6N2E2_277 are separated by 10 nucleotides Pf6N2E2_275 - NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3), at 340,017 to 341,801 _275 Pf6N2E2_276 - NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3), at 341,874 to 342,548 _276 Pf6N2E2_277 - NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3), at 342,559 to 342,972 _277 Position (kb) 341 342 343Strain fitness (log2 ratio) -1 0 1 2at 341.828 kb on - strandat 343.016 kb on - strandat 343.036 kb on - strandat 343.106 kb on - strandat 343.118 kb on - strandat 343.125 kb on + strandat 343.126 kb on - strandat 343.189 kb on - strandat 343.189 kb on - strandat 343.269 kb on + strandat 343.269 kb on + strandat 343.269 kb on + strandat 343.269 kb on + strandat 343.270 kb on - strandat 343.270 kb on - strandat 343.294 kb on + strandat 343.294 kb on + strandat 343.294 kb on + strandat 343.294 kb on + strandat 343.332 kb on + strandat 343.354 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml
remove
341,828 - +0.4
343,016 - +1.8
343,036 - +1.1
343,106 - +0.2
343,118 - +2.1
343,125 + -0.5
343,126 - -0.5
343,189 - -1.6
343,189 - -0.1
343,269 + +1.2
343,269 + +1.5
343,269 + +2.2
343,269 + +1.2
343,270 - -0.3
343,270 - +1.6
343,294 + +0.5
343,294 + -1.2
343,294 + -0.2
343,294 + +0.9
343,332 + +1.9
343,354 + +0.2

Or see this region's nucleotide sequence