Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2642

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
3,102,506	+		Pf6N2E2_2640	0.83	-0.7
3,102,506	+		Pf6N2E2_2640	0.83	-0.2
3,102,771	+		Pf6N2E2_2641	0.41	+0.4
3,102,771	+		Pf6N2E2_2641	0.41	+1.0
3,102,905	+		Pf6N2E2_2641	0.88	+2.4
3,102,905	+		Pf6N2E2_2641	0.88	+0.4
3,102,905	+		Pf6N2E2_2641	0.88	+2.6
3,102,905	+		Pf6N2E2_2641	0.88	+1.9
3,102,906	-		Pf6N2E2_2641	0.88	-0.5
3,102,906	-		Pf6N2E2_2641	0.88	-1.4
3,102,906	-		Pf6N2E2_2641	0.88	+0.3
3,102,906	-		Pf6N2E2_2641	0.88	-1.0
3,102,906	-		Pf6N2E2_2641	0.88	-1.4
3,102,906	-		Pf6N2E2_2641	0.88	-1.1
3,102,927	+				+1.4
3,102,928	-				+1.1
3,102,972	+				+2.2
3,102,972	+				+1.4
3,102,972	+				+1.0
3,102,973	-				-0.5
3,102,973	-				+0.2
3,102,973	-				+1.0
3,102,974	+				+1.9
3,102,974	+				+1.4
3,102,974	+				+0.2
3,102,974	+				-0.0
3,102,974	+				+0.9
3,102,975	-				-2.7
3,102,975	-				+0.9
3,102,975	-				-0.5
3,102,975	-				-3.7
3,102,975	-				-1.7
3,102,978	-				-1.7
3,103,230	+				-1.3
3,103,230	+				-4.6
3,103,230	+				-1.8
3,103,230	+				-1.7
3,103,230	+				-2.3
3,103,231	-				-4.3
3,103,231	-				-2.1
3,103,231	-				-2.3
3,103,231	-				-0.1
3,103,232	+				-3.4
3,103,232	+				-3.9
3,103,232	+				-2.7
3,103,232	+				-1.6
3,103,232	+				-0.3
3,103,232	+				-1.5
3,103,232	+				-2.6
3,103,232	+				-2.8
3,103,232	+				-0.9
3,103,232	+				-2.3
3,103,233	-				-1.9
3,103,233	-				-2.8
3,103,233	-				-1.5
3,103,233	-				-2.9
3,103,233	-				-1.8
3,103,244	+				-2.5
3,103,245	-				-2.7
3,103,245	-				-3.9
3,103,245	-				-2.7
3,103,245	-				-3.1
3,103,326	+		Pf6N2E2_2642	0.13	-3.9
3,103,326	+		Pf6N2E2_2642	0.13	-1.6
3,103,327	-		Pf6N2E2_2642	0.13	-1.4
3,103,477	+		Pf6N2E2_2642	0.20	-5.0
3,103,477	+		Pf6N2E2_2642	0.20	-2.3
3,103,478	-		Pf6N2E2_2642	0.20	-2.6
3,103,478	-		Pf6N2E2_2642	0.20	-2.0
3,103,478	-		Pf6N2E2_2642	0.20	-0.2
3,103,478	-		Pf6N2E2_2642	0.20	-1.7
3,103,478	-		Pf6N2E2_2642	0.20	-1.1
3,103,959	+		Pf6N2E2_2642	0.42	-1.1
3,104,084	+		Pf6N2E2_2642	0.48	-2.4
3,104,084	+		Pf6N2E2_2642	0.48	-1.1
3,104,085	-		Pf6N2E2_2642	0.48	-4.4
3,104,085	-		Pf6N2E2_2642	0.48	-2.6
3,104,150	+		Pf6N2E2_2642	0.51	-0.3
3,104,150	+		Pf6N2E2_2642	0.51	-3.7
3,104,150	+		Pf6N2E2_2642	0.51	+0.7
3,104,151	-		Pf6N2E2_2642	0.51	-1.4
3,104,162	+		Pf6N2E2_2642	0.52	-0.5
3,104,162	+		Pf6N2E2_2642	0.52	-2.4
3,104,396	+		Pf6N2E2_2642	0.62	-1.9
3,104,396	+		Pf6N2E2_2642	0.62	-1.3
3,104,396	+		Pf6N2E2_2642	0.62	-3.3
3,104,408	+		Pf6N2E2_2642	0.63	-1.1
3,104,409	-		Pf6N2E2_2642	0.63	-1.5
3,104,409	-		Pf6N2E2_2642	0.63	-2.9
3,104,409	-		Pf6N2E2_2642	0.63	+0.3
3,104,436	-		Pf6N2E2_2642	0.64	-0.8
3,104,436	-		Pf6N2E2_2642	0.64	-1.2
3,104,663	+		Pf6N2E2_2642	0.75	-0.2
3,104,664	-		Pf6N2E2_2642	0.75	-2.9
3,104,702	+		Pf6N2E2_2642	0.77	-3.3
3,104,702	+		Pf6N2E2_2642	0.77	-2.9
3,104,702	+		Pf6N2E2_2642	0.77	-1.7
3,104,703	-		Pf6N2E2_2642	0.77	-1.0
3,104,703	-		Pf6N2E2_2642	0.77	-1.7
3,104,748	-		Pf6N2E2_2642	0.79	-2.8
3,104,748	-		Pf6N2E2_2642	0.79	-3.3
3,104,975	+		Pf6N2E2_2642	0.89	-1.3
3,104,975	+		Pf6N2E2_2642	0.89	-2.6
3,104,976	-		Pf6N2E2_2642	0.89	-1.1
3,105,002	+				-2.4
3,105,026	+				-2.3
3,105,026	+				-0.4
3,105,027	-				-3.0
3,105,027	-				-1.3
3,105,027	-				-1.6
3,105,089	+				+0.5
3,105,089	+				-2.1
3,105,090	-				-2.8
3,105,090	-				-2.7
3,105,124	+				-2.9
3,105,125	-				-2.4
3,105,125	-				-3.6
3,105,152	+				-1.2
3,105,152	+				-2.7
3,105,152	+				-1.5
3,105,153	-				-4.2
3,105,153	-				-3.3
3,105,153	-				-2.1
3,105,153	-				-0.9
3,105,185	+				-1.1
3,105,185	+				-0.8
3,105,185	+				-2.7
3,105,186	-				-3.8
3,105,688	+		Pf6N2E2_2643	0.17	-0.3
3,105,833	+		Pf6N2E2_2643	0.25	-0.1
3,105,834	-		Pf6N2E2_2643	0.25	+0.6
3,105,954	+		Pf6N2E2_2643	0.31	+0.5
3,105,954	+		Pf6N2E2_2643	0.31	-1.4
3,105,954	+		Pf6N2E2_2643	0.31	+1.1
3,105,954	+		Pf6N2E2_2643	0.31	+0.1
3,105,955	-		Pf6N2E2_2643	0.31	-0.0
3,105,955	-		Pf6N2E2_2643	0.31	+0.6
3,105,955	-		Pf6N2E2_2643	0.31	-1.0
3,106,096	+		Pf6N2E2_2643	0.38	+1.3
3,106,097	-		Pf6N2E2_2643	0.38	+0.9
3,106,097	-		Pf6N2E2_2643	0.38	+0.3
3,106,097	-		Pf6N2E2_2643	0.38	-0.2
3,106,105	+		Pf6N2E2_2643	0.38	+1.1
3,106,105	+		Pf6N2E2_2643	0.38	+0.4
3,106,152	-		Pf6N2E2_2643	0.41	+0.3