Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2468

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
2,916,104	+				-2.2
2,916,104	+				-1.7
2,916,104	+				-0.7
2,916,104	+				-0.0
2,916,104	+				-0.4
2,916,105	-				+2.2
2,916,105	-				+0.0
2,916,105	-				+0.2
2,916,328	+		Pf6N2E2_2467	0.19	-2.2
2,916,329	-		Pf6N2E2_2467	0.19	-1.3
2,916,398	-		Pf6N2E2_2467	0.26	-2.4
2,916,541	-		Pf6N2E2_2467	0.42	-0.8
2,916,726	+		Pf6N2E2_2467	0.63	-0.3
2,916,981	+				-0.3
2,916,981	+				-0.4
2,916,981	+				+0.1
2,916,981	+				-1.5
2,916,982	-				+0.2
2,916,982	-				+0.8
2,917,092	+				+0.3
2,917,092	+				-2.5
2,917,093	-				+1.8
2,917,093	-				-0.6
2,917,095	-				+2.5
2,917,095	-				+1.4
2,917,095	-				-0.5
2,917,121	+				-1.2
2,917,122	-				-1.3
2,917,122	-				+1.1
2,917,122	-				+0.3
2,917,122	-				+0.8
2,917,184	+		Pf6N2E2_2468	0.10	-2.5
2,917,185	-		Pf6N2E2_2468	0.11	+1.0
2,917,220	+		Pf6N2E2_2468	0.14	-0.5
2,917,221	-		Pf6N2E2_2468	0.14	-1.2
2,917,221	-				+0.8
2,917,229	+		Pf6N2E2_2468	0.15	-0.9
2,917,229	+		Pf6N2E2_2468	0.15	+0.6
2,917,229	+		Pf6N2E2_2468	0.15	-1.7
2,917,229	+		Pf6N2E2_2468	0.15	-2.7
2,917,230	-		Pf6N2E2_2468	0.15	-0.3
2,917,245	-		Pf6N2E2_2468	0.17	+0.6
2,917,277	+		Pf6N2E2_2468	0.20	-1.0
2,917,278	-		Pf6N2E2_2468	0.20	-1.3
2,917,300	-		Pf6N2E2_2468	0.23	+0.3
2,917,365	+		Pf6N2E2_2468	0.29	-0.7
2,917,392	+		Pf6N2E2_2468	0.32	+1.7
2,917,425	-		Pf6N2E2_2468	0.36	-1.6
2,917,425	-		Pf6N2E2_2468	0.36	-0.5
2,917,425	-		Pf6N2E2_2468	0.36	-0.4
2,918,056	-				+0.7
2,918,073	+				-1.2
2,918,073	+				-0.4
2,918,073	+				-3.5
2,918,107	+				-1.9
2,918,107	+				-1.1
2,918,107	+				-0.6
2,918,107	+				-0.2
2,918,107	+				-0.2
2,918,107	+				-0.7
2,918,107	+				+1.1
2,918,107	+				-1.5
2,918,108	-				-0.7
2,918,108	-				-1.9
2,918,161	+		Pf6N2E2_2469	0.36	-0.7
2,918,162	-		Pf6N2E2_2469	0.36	-1.3
2,918,162	-		Pf6N2E2_2469	0.36	-2.9
2,918,163	+		Pf6N2E2_2469	0.37	-0.2
2,918,172	-		Pf6N2E2_2469	0.41	-2.1
2,918,238	-		Pf6N2E2_2469	0.74	-2.3
2,918,238	-		Pf6N2E2_2469	0.74	-1.5
2,918,300	-				-0.7
2,918,333	-				-1.7
2,918,523	-		Pf6N2E2_2470	0.20	-0.5
2,918,570	+		Pf6N2E2_2470	0.25	-1.6
2,918,570	+		Pf6N2E2_2470	0.25	-1.2
2,918,570	+		Pf6N2E2_2470	0.25	-1.4
2,918,570	+		Pf6N2E2_2470	0.25	-1.5
2,918,571	-		Pf6N2E2_2470	0.25	-4.2
2,918,571	-		Pf6N2E2_2470	0.25	-2.4
2,918,588	+		Pf6N2E2_2470	0.26	-2.3
2,918,588	+		Pf6N2E2_2470	0.26	-1.5
2,918,588	+		Pf6N2E2_2470	0.26	-2.7
2,918,589	-		Pf6N2E2_2470	0.26	-2.2
2,918,642	+		Pf6N2E2_2470	0.31	-0.9
2,918,642	+		Pf6N2E2_2470	0.31	-1.4
2,918,762	+		Pf6N2E2_2470	0.42	-1.4
2,918,762	+		Pf6N2E2_2470	0.42	-1.2
2,918,762	+		Pf6N2E2_2470	0.42	-1.7
2,918,762	+		Pf6N2E2_2470	0.42	-0.5
2,918,763	-		Pf6N2E2_2470	0.42	-2.5
2,918,763	-		Pf6N2E2_2470	0.42	-1.7
2,918,763	-		Pf6N2E2_2470	0.42	-2.2
2,918,763	-		Pf6N2E2_2470	0.42	-2.0
2,918,990	+		Pf6N2E2_2470	0.64	-1.7
2,918,991	-		Pf6N2E2_2470	0.64	-2.2
2,919,032	+		Pf6N2E2_2470	0.67	-1.7
2,919,033	-		Pf6N2E2_2470	0.68	-2.5
2,919,033	-		Pf6N2E2_2470	0.68	-1.6